Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1935 and Shew_1936 are separated by 164 nucleotides Shew_1936 and Shew_1937 are separated by 125 nucleotides Shew_1937 and Shew_1938 are separated by 9 nucleotides Shew_1938 and Shew_1939 overlap by 4 nucleotides Shew_1939 and ansA are separated by 59 nucleotides
Shew_1935: Shew_1935 - hypothetical protein (RefSeq), at 2,235,127 to 2,236,905
_1935
Shew_1936: Shew_1936 - two component transcriptional regulator (RefSeq), at 2,237,070 to 2,237,750
_1936
Shew_1937: Shew_1937 - peptidase M14, carboxypeptidase A (RefSeq), at 2,237,876 to 2,239,003
_1937
Shew_1938: Shew_1938 - hypothetical protein (RefSeq), at 2,239,013 to 2,239,330
_1938
Shew_1939: Shew_1939 - hypothetical protein (RefSeq), at 2,239,327 to 2,239,608
_1939
Shew_1940: ansA - cytoplasmic asparaginase I (RefSeq), at 2,239,668 to 2,240,681
ansA
Position (kb)
2237
2238
2239
2240 Strain fitness (log2 ratio)
-1
0
1 at 2238.296 kb on - strand, within Shew_1937 at 2238.312 kb on + strand, within Shew_1937 at 2238.357 kb on - strand, within Shew_1937 at 2238.804 kb on + strand, within Shew_1937 at 2239.547 kb on - strand, within Shew_1939 at 2239.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 2,238,296 - Shew_1937 0.37 -0.5 2,238,312 + Shew_1937 0.39 +0.2 2,238,357 - Shew_1937 0.43 -0.7 2,238,804 + Shew_1937 0.82 -1.0 2,239,547 - Shew_1939 0.78 +0.5 2,239,726 + +0.6
Or see this region's nucleotide sequence