Strain Fitness in Shewanella loihica PV-4 around Shew_1932

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1930 and Shew_1931 are separated by 200 nucleotidesShew_1931 and cls are separated by 166 nucleotidescls and Shew_1933 are separated by 80 nucleotides Shew_1930: Shew_1930 - CopG/DNA-binding domain-containing protein (RefSeq), at 2,230,307 to 2,230,504 _1930 Shew_1931: Shew_1931 - alkylphosphonate utilization operon protein PhnA (RefSeq), at 2,230,705 to 2,231,049 _1931 Shew_1932: cls - cardiolipin synthetase (RefSeq), at 2,231,216 to 2,232,814 cls Shew_1933: Shew_1933 - endonuclease/exonuclease/phosphatase (RefSeq), at 2,232,895 to 2,233,773 _1933 Position (kb) 2231 2232 2233Strain fitness (log2 ratio) -2 -1 0 1at 2230.744 kb on + strand, within Shew_1931at 2230.888 kb on - strand, within Shew_1931at 2231.505 kb on + strand, within clsat 2231.505 kb on + strand, within clsat 2231.513 kb on - strand, within clsat 2231.513 kb on - strand, within clsat 2231.641 kb on + strand, within clsat 2232.310 kb on - strand, within clsat 2232.885 kb on + strandat 2233.249 kb on - strand, within Shew_1933at 2233.426 kb on - strand, within Shew_1933

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,230,744 + Shew_1931 0.11 -0.4
2,230,888 - Shew_1931 0.53 -0.0
2,231,505 + cls Shew_1932 0.18 -2.4
2,231,505 + cls Shew_1932 0.18 -1.5
2,231,513 - cls Shew_1932 0.19 -2.0
2,231,513 - cls Shew_1932 0.19 +0.2
2,231,641 + cls Shew_1932 0.27 -1.6
2,232,310 - cls Shew_1932 0.68 -2.1
2,232,885 + -0.2
2,233,249 - Shew_1933 0.40 +0.8
2,233,426 - Shew_1933 0.60 -0.6

Or see this region's nucleotide sequence