Strain Fitness in Shewanella loihica PV-4 around Shew_1894

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1892 and Shew_1893 are separated by 58 nucleotidesShew_1893 and Shew_1894 are separated by 226 nucleotidesShew_1894 and Shew_1895 are separated by 209 nucleotidesShew_1895 and Shew_1896 overlap by 11 nucleotides Shew_1892: Shew_1892 - SNF2-related protein (RefSeq), at 2,183,542 to 2,187,027 _1892 Shew_1893: Shew_1893 - hypothetical protein (RefSeq), at 2,187,086 to 2,187,505 _1893 Shew_1894: Shew_1894 - hypothetical protein (RefSeq), at 2,187,732 to 2,189,663 _1894 Shew_1895: Shew_1895 - redoxin domain-containing protein (RefSeq), at 2,189,873 to 2,190,442 _1895 Shew_1896: Shew_1896 - putative lipoprotein (RefSeq), at 2,190,432 to 2,190,650 _1896 Position (kb) 2187 2188 2189 2190Strain fitness (log2 ratio) -1 0 1 2at 2187.083 kb on + strandat 2187.148 kb on + strand, within Shew_1893at 2187.270 kb on + strand, within Shew_1893at 2187.292 kb on + strand, within Shew_1893at 2187.331 kb on + strand, within Shew_1893at 2187.462 kb on - strand, within Shew_1893at 2187.805 kb on + strandat 2187.927 kb on + strand, within Shew_1894at 2188.203 kb on + strand, within Shew_1894at 2188.462 kb on + strand, within Shew_1894at 2188.662 kb on - strand, within Shew_1894at 2188.715 kb on + strand, within Shew_1894at 2188.900 kb on + strand, within Shew_1894at 2189.321 kb on - strand, within Shew_1894at 2190.621 kb on - strand, within Shew_1896

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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2,187,083 + -0.2
2,187,148 + Shew_1893 0.15 +2.2
2,187,270 + Shew_1893 0.44 -0.1
2,187,292 + Shew_1893 0.49 +1.0
2,187,331 + Shew_1893 0.58 -1.6
2,187,462 - Shew_1893 0.90 +0.2
2,187,805 + +0.0
2,187,927 + Shew_1894 0.10 -0.0
2,188,203 + Shew_1894 0.24 +0.5
2,188,462 + Shew_1894 0.38 +1.3
2,188,662 - Shew_1894 0.48 -0.0
2,188,715 + Shew_1894 0.51 +0.3
2,188,900 + Shew_1894 0.60 +0.3
2,189,321 - Shew_1894 0.82 +0.3
2,190,621 - Shew_1896 0.86 +0.3

Or see this region's nucleotide sequence