Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1892 and Shew_1893 are separated by 58 nucleotides Shew_1893 and Shew_1894 are separated by 226 nucleotides Shew_1894 and Shew_1895 are separated by 209 nucleotides Shew_1895 and Shew_1896 overlap by 11 nucleotides
Shew_1892: Shew_1892 - SNF2-related protein (RefSeq), at 2,183,542 to 2,187,027
_1892
Shew_1893: Shew_1893 - hypothetical protein (RefSeq), at 2,187,086 to 2,187,505
_1893
Shew_1894: Shew_1894 - hypothetical protein (RefSeq), at 2,187,732 to 2,189,663
_1894
Shew_1895: Shew_1895 - redoxin domain-containing protein (RefSeq), at 2,189,873 to 2,190,442
_1895
Shew_1896: Shew_1896 - putative lipoprotein (RefSeq), at 2,190,432 to 2,190,650
_1896
Position (kb)
2187
2188
2189
2190 Strain fitness (log2 ratio)
-1
0
1
2 at 2187.083 kb on + strand at 2187.148 kb on + strand, within Shew_1893 at 2187.270 kb on + strand, within Shew_1893 at 2187.292 kb on + strand, within Shew_1893 at 2187.331 kb on + strand, within Shew_1893 at 2187.462 kb on - strand, within Shew_1893 at 2187.805 kb on + strand at 2187.927 kb on + strand, within Shew_1894 at 2188.203 kb on + strand, within Shew_1894 at 2188.462 kb on + strand, within Shew_1894 at 2188.662 kb on - strand, within Shew_1894 at 2188.715 kb on + strand, within Shew_1894 at 2188.900 kb on + strand, within Shew_1894 at 2189.321 kb on - strand, within Shew_1894 at 2190.621 kb on - strand, within Shew_1896
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 2,187,083 + -0.2 2,187,148 + Shew_1893 0.15 +2.2 2,187,270 + Shew_1893 0.44 -0.1 2,187,292 + Shew_1893 0.49 +1.0 2,187,331 + Shew_1893 0.58 -1.6 2,187,462 - Shew_1893 0.90 +0.2 2,187,805 + +0.0 2,187,927 + Shew_1894 0.10 -0.0 2,188,203 + Shew_1894 0.24 +0.5 2,188,462 + Shew_1894 0.38 +1.3 2,188,662 - Shew_1894 0.48 -0.0 2,188,715 + Shew_1894 0.51 +0.3 2,188,900 + Shew_1894 0.60 +0.3 2,189,321 - Shew_1894 0.82 +0.3 2,190,621 - Shew_1896 0.86 +0.3
Or see this region's nucleotide sequence