Strain Fitness in Shewanella loihica PV-4 around Shew_1749

Experiment: Paraquat dichloride 10 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 10 mg/ml
1,996,647	+				-0.3
1,996,723	+				+0.5
1,996,736	-				-0.8
1,996,741	-				+0.8
1,996,843	-				+0.7
1,997,190	+				+0.2
1,997,198	-				+1.0
1,997,567	+		Shew_1749	0.33	+0.4
1,997,932	+		Shew_1749	0.57	-1.7
1,997,932	+		Shew_1749	0.57	+0.8
1,997,940	-		Shew_1749	0.58	+0.4
1,997,965	+		Shew_1749	0.59	+1.4
1,998,043	-		Shew_1749	0.64	+1.1
1,998,546	+				+0.3
1,998,791	-				+0.5
1,998,803	-				+1.5
1,998,935	-				+0.5
1,998,982	+				+0.9
1,999,148	-		Shew_1750	0.18	+0.5
1,999,148	+		Shew_1750	0.18	-1.7
1,999,186	-		Shew_1750	0.29	-0.2
1,999,248	+		Shew_1750	0.46	-2.0
1,999,255	+		Shew_1750	0.48	+0.5
1,999,255	+		Shew_1750	0.48	-0.7
1,999,256	-		Shew_1750	0.49	+0.6
1,999,256	-		Shew_1750	0.49	-0.2
1,999,258	-		Shew_1750	0.49	-1.7
1,999,320	+		Shew_1750	0.67	-1.7
1,999,358	+		Shew_1750	0.78	-0.0
1,999,358	+		Shew_1750	0.78	-0.7
1,999,358	+		Shew_1750	0.78	-0.4
1,999,366	-		Shew_1750	0.80	+0.3
1,999,393	-		Shew_1750	0.88	+0.6
1,999,411	+				+0.0
1,999,411	+				-3.9
1,999,417	+				+0.6
1,999,425	+				+0.5
1,999,433	+				-0.7
1,999,433	+				-0.0
1,999,433	+				-0.2
1,999,433	+				+0.2
1,999,441	-				+1.0
1,999,441	-				-0.2
1,999,441	-				-0.4
1,999,441	-				+0.0
1,999,441	-				+0.2
1,999,441	-				-0.6
1,999,446	+				+1.1
1,999,466	+				+0.0
1,999,488	+				+1.3
1,999,511	+				+1.6
1,999,521	+				+0.2
1,999,521	+				-0.7
1,999,521	+				+0.6
1,999,521	+				-0.0
1,999,527	+				+0.5
1,999,527	+				-0.1
1,999,529	-				-0.2
1,999,529	+				+0.8
1,999,529	-				+0.2
1,999,535	-				+0.6
1,999,536	-				+0.2
1,999,537	-				+0.1
1,999,537	-				-0.9
1,999,537	-				+0.0
1,999,542	+				+0.6
1,999,542	+				-0.0
1,999,550	-				-0.4
1,999,558	+				+0.6
1,999,572	+				+0.6
1,999,572	+				+1.3