Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1708 and Shew_1709 are separated by 130 nucleotides Shew_1709 and Shew_1710 are separated by 10 nucleotides Shew_1710 and Shew_1711 are separated by 161 nucleotides Shew_1711 and Shew_1712 are separated by 151 nucleotides
Shew_1708: Shew_1708 - hypothetical protein (RefSeq), at 1,961,524 to 1,962,102
_1708
Shew_1709: Shew_1709 - hypothetical protein (RefSeq), at 1,962,233 to 1,962,598
_1709
Shew_1710: Shew_1710 - hypothetical protein (RefSeq), at 1,962,609 to 1,962,854
_1710
Shew_1711: Shew_1711 - methyl-accepting chemotaxis protein (RefSeq), at 1,963,016 to 1,964,173
_1711
Shew_1712: Shew_1712 - hypothetical protein (RefSeq), at 1,964,325 to 1,965,611
_1712
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -1
0
1 at 1962.096 kb on + strand at 1962.460 kb on + strand, within Shew_1709 at 1962.799 kb on + strand, within Shew_1710 at 1962.952 kb on - strand at 1963.104 kb on + strand at 1964.050 kb on + strand, within Shew_1711 at 1964.475 kb on + strand, within Shew_1712 at 1964.659 kb on + strand, within Shew_1712 at 1964.770 kb on + strand, within Shew_1712
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 1,962,096 + +0.7 1,962,460 + Shew_1709 0.62 -1.1 1,962,799 + Shew_1710 0.77 +0.3 1,962,952 - +0.6 1,963,104 + -0.3 1,964,050 + Shew_1711 0.89 -0.7 1,964,475 + Shew_1712 0.12 -1.6 1,964,659 + Shew_1712 0.26 -0.7 1,964,770 + Shew_1712 0.35 +0.3
Or see this region's nucleotide sequence