Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1705 and Shew_1706 are separated by 92 nucleotides Shew_1706 and Shew_1707 are separated by 335 nucleotides Shew_1707 and Shew_1708 are separated by 113 nucleotides Shew_1708 and Shew_1709 are separated by 130 nucleotides
Shew_1705: Shew_1705 - hypothetical protein (RefSeq), at 1,959,298 to 1,959,663
_1705
Shew_1706: Shew_1706 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 1,959,756 to 1,960,148
_1706
Shew_1707: Shew_1707 - hypothetical protein (RefSeq), at 1,960,484 to 1,961,410
_1707
Shew_1708: Shew_1708 - hypothetical protein (RefSeq), at 1,961,524 to 1,962,102
_1708
Shew_1709: Shew_1709 - hypothetical protein (RefSeq), at 1,962,233 to 1,962,598
_1709
Position (kb) 1960
1961
1962 Strain fitness (log2 ratio) -1
0
1
2 at 1959.560 kb on + strand, within Shew_1705 at 1960.036 kb on + strand, within Shew_1706 at 1960.183 kb on + strand at 1960.517 kb on + strand at 1960.749 kb on + strand, within Shew_1707 at 1960.799 kb on + strand, within Shew_1707 at 1961.542 kb on - strand at 1961.559 kb on - strand at 1961.879 kb on + strand, within Shew_1708 at 1962.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 1,959,560 + Shew_1705 0.72 -0.0 1,960,036 + Shew_1706 0.71 -0.2 1,960,183 + +0.3 1,960,517 + +0.7 1,960,749 + Shew_1707 0.29 -1.3 1,960,799 + Shew_1707 0.34 -0.2 1,961,542 - -0.7 1,961,559 - +2.3 1,961,879 + Shew_1708 0.61 +1.3 1,962,096 + +0.7
Or see this region's nucleotide sequence