Strain Fitness in Shewanella loihica PV-4 around Shew_1674

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1672 and fabG are separated by 4 nucleotidesfabG and Shew_1674 are separated by 113 nucleotidesShew_1674 and Shew_1675 are separated by 9 nucleotides Shew_1672: Shew_1672 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 1,922,046 to 1,922,945 _1672 Shew_1673: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 1,922,950 to 1,923,708 fabG Shew_1674: Shew_1674 - hypothetical protein (RefSeq), at 1,923,822 to 1,924,079 _1674 Shew_1675: Shew_1675 - peptidase S9 prolyl oligopeptidase (RefSeq), at 1,924,089 to 1,926,140 _1675 Position (kb) 1923 1924 1925Strain fitness (log2 ratio) -1 0 1at 1922.989 kb on - strandat 1923.385 kb on - strand, within fabGat 1923.400 kb on - strand, within fabGat 1924.267 kb on - strandat 1924.585 kb on - strand, within Shew_1675

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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1,922,989 - +0.5
1,923,385 - fabG Shew_1673 0.57 +0.0
1,923,400 - fabG Shew_1673 0.59 +0.3
1,924,267 - +0.2
1,924,585 - Shew_1675 0.24 -0.2

Or see this region's nucleotide sequence