Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rrmA and Shew_1614 are separated by 302 nucleotides Shew_1614 and Shew_1615 are separated by 478 nucleotides Shew_1615 and Shew_1616 overlap by 4 nucleotides Shew_1616 and Shew_1617 are separated by 56 nucleotides
Shew_1613: rrmA - 23S rRNA methyltransferase A (RefSeq), at 1,845,113 to 1,845,925
rrmA
Shew_1614: Shew_1614 - cold-shock DNA-binding domain-containing protein (RefSeq), at 1,846,228 to 1,846,434
_1614
Shew_1615: Shew_1615 - ABC transporter-related protein (RefSeq), at 1,846,913 to 1,847,818
_1615
Shew_1616: Shew_1616 - hypothetical protein (RefSeq), at 1,847,815 to 1,848,669
_1616
Shew_1617: Shew_1617 - hypothetical protein (RefSeq), at 1,848,726 to 1,849,373
_1617
Position (kb) 1846
1847
1848 Strain fitness (log2 ratio) -2
-1
0
1 at 1846.816 kb on + strand at 1846.944 kb on - strand at 1847.380 kb on - strand, within Shew_1615 at 1847.562 kb on - strand, within Shew_1615 at 1847.892 kb on + strand at 1848.020 kb on + strand, within Shew_1616 at 1848.035 kb on + strand, within Shew_1616 at 1848.615 kb on - strand at 1848.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 1,846,816 + +0.9 1,846,944 - -0.9 1,847,380 - Shew_1615 0.52 -0.1 1,847,562 - Shew_1615 0.72 +0.1 1,847,892 + -0.3 1,848,020 + Shew_1616 0.24 -1.0 1,848,035 + Shew_1616 0.26 -2.0 1,848,615 - -0.1 1,848,644 - +0.5
Or see this region's nucleotide sequence