Strain Fitness in Shewanella loihica PV-4 around Shew_0821

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0820 and Shew_0821 are separated by 156 nucleotidesShew_0821 and Shew_0822 are separated by 66 nucleotidesShew_0822 and Shew_0823 are separated by 246 nucleotides Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850 _0820 Shew_0821: Shew_0821 - mitomycin resistance protein (RefSeq), at 945,007 to 945,294 _0821 Shew_0822: Shew_0822 - lysine exporter protein LysE/YggA (RefSeq), at 945,361 to 945,954 _0822 Shew_0823: Shew_0823 - LysR family transcriptional regulator (RefSeq), at 946,201 to 947,106 _0823 Position (kb) 945 946Strain fitness (log2 ratio) -1 0 1at 944.183 kb on - strand, within Shew_0820at 944.701 kb on + strand, within Shew_0820at 945.195 kb on + strand, within Shew_0821at 945.535 kb on + strand, within Shew_0822at 945.758 kb on + strand, within Shew_0822at 945.888 kb on + strand, within Shew_0822at 946.073 kb on + strandat 946.086 kb on + strandat 946.093 kb on - strandat 946.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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944,183 - Shew_0820 0.44 +0.7
944,701 + Shew_0820 0.87 +0.2
945,195 + Shew_0821 0.65 -0.8
945,535 + Shew_0822 0.29 +0.2
945,758 + Shew_0822 0.67 +0.5
945,888 + Shew_0822 0.89 -0.6
946,073 + -0.7
946,086 + +0.3
946,093 - +0.5
946,225 - +0.4

Or see this region's nucleotide sequence