Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0807 and Shew_0808 are separated by 305 nucleotides Shew_0808 and Shew_0809 are separated by 105 nucleotides
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Shew_0809: Shew_0809 - formate dehydrogenase, alpha subunit (RefSeq), at 927,171 to 931,403
_0809
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -2
-1
0
1 at 924.436 kb on + strand, within Shew_0807 at 924.466 kb on - strand, within Shew_0807 at 924.550 kb on - strand, within Shew_0807 at 924.601 kb on + strand at 924.601 kb on + strand at 924.893 kb on + strand at 924.981 kb on + strand at 925.094 kb on + strand at 925.102 kb on - strand at 925.102 kb on - strand at 925.541 kb on + strand at 925.565 kb on + strand at 925.573 kb on - strand, within Shew_0808 at 925.971 kb on - strand, within Shew_0808 at 926.123 kb on + strand, within Shew_0808 at 926.131 kb on - strand, within Shew_0808 at 926.162 kb on - strand, within Shew_0808 at 926.232 kb on + strand, within Shew_0808 at 926.374 kb on + strand, within Shew_0808 at 926.382 kb on - strand, within Shew_0808 at 926.395 kb on + strand, within Shew_0808 at 926.403 kb on - strand, within Shew_0808 at 926.525 kb on - strand, within Shew_0808 at 926.549 kb on + strand, within Shew_0808 at 926.770 kb on + strand, within Shew_0808 at 927.053 kb on + strand at 927.060 kb on - strand at 927.072 kb on + strand at 927.072 kb on + strand at 927.306 kb on + strand at 927.644 kb on + strand, within Shew_0809 at 927.644 kb on + strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.700 kb on - strand, within Shew_0809 at 927.720 kb on + strand, within Shew_0809 at 927.738 kb on + strand, within Shew_0809 at 927.836 kb on + strand, within Shew_0809 at 927.844 kb on - strand, within Shew_0809 at 927.846 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.040 kb on - strand, within Shew_0809
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 924,436 + Shew_0807 0.87 +0.3 924,466 - Shew_0807 0.88 +1.6 924,550 - Shew_0807 0.89 +0.3 924,601 + -0.2 924,601 + +0.8 924,893 + +0.3 924,981 + +0.3 925,094 + +1.7 925,102 - -0.9 925,102 - -1.5 925,541 + +0.1 925,565 + -0.4 925,573 - Shew_0808 0.10 +0.1 925,971 - Shew_0808 0.34 +0.2 926,123 + Shew_0808 0.43 -1.9 926,131 - Shew_0808 0.44 -0.3 926,162 - Shew_0808 0.46 +0.4 926,232 + Shew_0808 0.50 -0.2 926,374 + Shew_0808 0.58 +0.2 926,382 - Shew_0808 0.59 -0.5 926,395 + Shew_0808 0.60 +0.0 926,403 - Shew_0808 0.60 +0.2 926,525 - Shew_0808 0.68 +1.7 926,549 + Shew_0808 0.69 -0.4 926,770 + Shew_0808 0.82 -0.6 927,053 + +1.2 927,060 - -0.2 927,072 + +0.1 927,072 + -0.2 927,306 + +0.9 927,644 + Shew_0809 0.11 +0.2 927,644 + Shew_0809 0.11 +0.2 927,652 - Shew_0809 0.11 -0.2 927,652 - Shew_0809 0.11 -0.6 927,652 - Shew_0809 0.11 +0.3 927,652 - Shew_0809 0.11 +0.5 927,700 - Shew_0809 0.12 +0.2 927,720 + Shew_0809 0.13 -0.7 927,738 + Shew_0809 0.13 -0.7 927,836 + Shew_0809 0.16 +0.7 927,844 - Shew_0809 0.16 +0.4 927,846 + Shew_0809 0.16 +0.7 928,037 + Shew_0809 0.20 +1.0 928,037 + Shew_0809 0.20 -0.1 928,040 - Shew_0809 0.21 +1.1
Or see this region's nucleotide sequence