Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0794 and Shew_0795 are separated by 27 nucleotides Shew_0795 and Shew_0796 are separated by 302 nucleotides Shew_0796 and Shew_0797 are separated by 103 nucleotides
Shew_0794: Shew_0794 - diguanylate cyclase (RefSeq), at 906,794 to 907,978
_0794
Shew_0795: Shew_0795 - hypothetical protein (RefSeq), at 908,006 to 908,410
_0795
Shew_0796: Shew_0796 - hypothetical protein (RefSeq), at 908,713 to 908,910
_0796
Shew_0797: Shew_0797 - hypothetical protein (RefSeq), at 909,014 to 910,432
_0797
Position (kb) 908
909 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 907.226 kb on + strand, within Shew_0794 at 907.234 kb on - strand, within Shew_0794 at 907.355 kb on - strand, within Shew_0794 at 907.614 kb on + strand, within Shew_0794 at 907.912 kb on + strand at 908.002 kb on - strand at 908.089 kb on + strand, within Shew_0795 at 908.332 kb on + strand, within Shew_0795 at 908.412 kb on + strand at 908.510 kb on - strand at 908.611 kb on - strand at 908.710 kb on + strand at 908.710 kb on + strand at 908.718 kb on - strand at 908.918 kb on + strand at 908.926 kb on - strand at 908.936 kb on + strand at 908.975 kb on - strand at 909.068 kb on + strand at 909.309 kb on + strand, within Shew_0797 at 909.341 kb on + strand, within Shew_0797 at 909.366 kb on + strand, within Shew_0797
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 907,226 + Shew_0794 0.36 +0.4 907,234 - Shew_0794 0.37 -0.2 907,355 - Shew_0794 0.47 +1.2 907,614 + Shew_0794 0.69 +0.1 907,912 + -0.1 908,002 - -0.3 908,089 + Shew_0795 0.20 +1.7 908,332 + Shew_0795 0.80 +1.0 908,412 + +1.0 908,510 - +0.8 908,611 - +0.3 908,710 + +0.2 908,710 + -0.2 908,718 - +0.4 908,918 + +0.5 908,926 - +0.1 908,936 + +1.4 908,975 - -1.4 909,068 + -0.1 909,309 + Shew_0797 0.21 +0.6 909,341 + Shew_0797 0.23 +0.2 909,366 + Shew_0797 0.25 +5.0
Or see this region's nucleotide sequence