Strain Fitness in Shewanella loihica PV-4 around Shew_0737

Experiment: Paraquat dichloride 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0736 and Shew_0737 are separated by 123 nucleotidesShew_0737 and Shew_0738 are separated by 136 nucleotides Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472 _0736 Shew_0737: Shew_0737 - MarR family transcriptional regulator (RefSeq), at 838,596 to 839,564 _0737 Shew_0738: Shew_0738 - NTPase (RefSeq), at 839,701 to 840,318 _0738 Position (kb) 838 839 840Strain fitness (log2 ratio) -2 -1 0 1 2at 837.967 kb on + strand, within Shew_0736at 838.136 kb on - strand, within Shew_0736at 838.444 kb on - strandat 838.444 kb on - strandat 838.457 kb on + strandat 838.465 kb on - strandat 838.465 kb on - strandat 838.495 kb on + strandat 838.799 kb on - strand, within Shew_0737at 838.911 kb on + strand, within Shew_0737at 839.083 kb on + strand, within Shew_0737at 839.086 kb on - strand, within Shew_0737at 839.096 kb on - strand, within Shew_0737at 839.144 kb on + strand, within Shew_0737at 839.157 kb on - strand, within Shew_0737at 839.228 kb on - strand, within Shew_0737at 839.445 kb on - strand, within Shew_0737at 839.445 kb on - strand, within Shew_0737at 839.670 kb on - strandat 839.675 kb on - strandat 839.690 kb on - strandat 839.862 kb on + strand, within Shew_0738at 840.257 kb on - strandat 840.410 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
remove
837,967 + Shew_0736 0.51 +0.5
838,136 - Shew_0736 0.68 +0.2
838,444 - +0.5
838,444 - -0.5
838,457 + +0.7
838,465 - -1.8
838,465 - -0.2
838,495 + -0.4
838,799 - Shew_0737 0.21 +0.5
838,911 + Shew_0737 0.33 +1.8
839,083 + Shew_0737 0.50 +0.2
839,086 - Shew_0737 0.51 +0.9
839,096 - Shew_0737 0.52 +0.2
839,144 + Shew_0737 0.57 +0.5
839,157 - Shew_0737 0.58 +0.3
839,228 - Shew_0737 0.65 +0.3
839,445 - Shew_0737 0.88 +0.7
839,445 - Shew_0737 0.88 +0.8
839,670 - -0.2
839,675 - -1.8
839,690 - -2.3
839,862 + Shew_0738 0.26 -1.2
840,257 - -0.0
840,410 + +0.6

Or see this region's nucleotide sequence