Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0619 and Shew_0620 are separated by 58 nucleotides Shew_0620 and Shew_0621 are separated by 80 nucleotides Shew_0621 and Shew_0622 are separated by 60 nucleotides
Shew_0619: Shew_0619 - adenylate cyclase (RefSeq), at 704,222 to 705,709
_0619
Shew_0620: Shew_0620 - ion transport 2 domain-containing protein (RefSeq), at 705,768 to 706,562
_0620
Shew_0621: Shew_0621 - hypothetical protein (RefSeq), at 706,643 to 706,975
_0621
Shew_0622: Shew_0622 - hypothetical protein (RefSeq), at 707,036 to 707,680
_0622
Position (kb) 705
706
707 Strain fitness (log2 ratio) -1
0
1
2 at 704.883 kb on + strand, within Shew_0619 at 705.084 kb on + strand, within Shew_0619 at 705.136 kb on + strand, within Shew_0619 at 705.240 kb on + strand, within Shew_0619 at 705.300 kb on - strand, within Shew_0619 at 705.327 kb on - strand, within Shew_0619 at 705.328 kb on - strand, within Shew_0619 at 705.520 kb on + strand, within Shew_0619 at 706.222 kb on - strand, within Shew_0620 at 706.768 kb on - strand, within Shew_0621 at 706.790 kb on - strand, within Shew_0621 at 706.831 kb on - strand, within Shew_0621 at 706.990 kb on - strand at 707.029 kb on + strand at 707.029 kb on + strand at 707.111 kb on - strand, within Shew_0622 at 707.495 kb on - strand, within Shew_0622
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 704,883 + Shew_0619 0.44 +0.6 705,084 + Shew_0619 0.58 +0.6 705,136 + Shew_0619 0.61 +0.6 705,240 + Shew_0619 0.68 -0.2 705,300 - Shew_0619 0.72 +1.6 705,327 - Shew_0619 0.74 +0.2 705,328 - Shew_0619 0.74 +0.6 705,520 + Shew_0619 0.87 -0.8 706,222 - Shew_0620 0.57 +1.3 706,768 - Shew_0621 0.38 +1.2 706,790 - Shew_0621 0.44 +0.7 706,831 - Shew_0621 0.56 +0.2 706,990 - +0.5 707,029 + -0.1 707,029 + +2.1 707,111 - Shew_0622 0.12 -0.2 707,495 - Shew_0622 0.71 +0.9
Or see this region's nucleotide sequence