Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0599 and Shew_0600 are separated by 65 nucleotides Shew_0600 and Shew_0601 are separated by 594 nucleotides Shew_0601 and Shew_0602 are separated by 835 nucleotides
Shew_0599: Shew_0599 - hypothetical protein (RefSeq), at 678,532 to 679,308
_0599
Shew_0600: Shew_0600 - hypothetical protein (RefSeq), at 679,374 to 679,688
_0600
Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669
_0601
Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158
_0602
Position (kb) 680
681 Strain fitness (log2 ratio) -2
-1
0
1
2 at 679.305 kb on - strand at 679.305 kb on - strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.326 kb on + strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.334 kb on - strand at 679.345 kb on - strand at 679.356 kb on - strand at 679.397 kb on + strand at 679.404 kb on - strand at 679.419 kb on + strand, within Shew_0600 at 679.445 kb on - strand, within Shew_0600 at 679.447 kb on - strand, within Shew_0600 at 679.543 kb on - strand, within Shew_0600 at 679.551 kb on - strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.553 kb on + strand, within Shew_0600 at 679.556 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.561 kb on - strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.580 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.587 kb on + strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.588 kb on - strand, within Shew_0600 at 679.593 kb on - strand, within Shew_0600 at 679.597 kb on + strand, within Shew_0600 at 679.611 kb on + strand, within Shew_0600 at 679.657 kb on + strand at 679.702 kb on + strand at 679.702 kb on + strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.710 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.730 kb on - strand at 679.737 kb on + strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.745 kb on - strand at 679.746 kb on + strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.754 kb on - strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.758 kb on + strand at 679.763 kb on + strand at 679.766 kb on - strand at 679.766 kb on - strand at 679.803 kb on + strand at 679.803 kb on + strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.811 kb on - strand at 679.855 kb on + strand at 679.907 kb on + strand at 679.907 kb on + strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on - strand at 679.915 kb on + strand at 679.915 kb on - strand at 679.923 kb on - strand at 679.923 kb on - strand at 679.930 kb on - strand at 679.968 kb on + strand at 679.983 kb on - strand at 680.003 kb on - strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.060 kb on + strand at 680.066 kb on + strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.068 kb on - strand at 680.074 kb on + strand at 680.075 kb on - strand at 680.082 kb on - strand at 680.084 kb on + strand at 680.089 kb on - strand at 680.116 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.164 kb on + strand at 680.172 kb on - strand at 680.172 kb on - strand at 680.172 kb on + strand at 680.174 kb on + strand at 680.220 kb on + strand at 680.220 kb on + strand at 680.221 kb on + strand at 680.223 kb on - strand at 680.228 kb on - strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.234 kb on + strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.242 kb on - strand at 680.244 kb on + strand at 680.323 kb on + strand, within Shew_0601 at 680.532 kb on + strand, within Shew_0601 at 680.538 kb on + strand, within Shew_0601 at 680.546 kb on - strand, within Shew_0601 at 680.561 kb on + strand, within Shew_0601 at 680.574 kb on - strand, within Shew_0601 at 680.660 kb on - strand at 680.706 kb on - strand at 680.725 kb on + strand at 680.733 kb on - strand at 680.733 kb on + strand at 680.733 kb on - strand at 680.733 kb on - strand at 680.992 kb on - strand at 681.145 kb on + strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.156 kb on + strand at 681.166 kb on - strand at 681.225 kb on + strand at 681.288 kb on + strand at 681.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 679,305 - -0.0 679,305 - -1.1 679,326 + +0.1 679,326 + +0.1 679,326 + +0.1 679,334 - -2.6 679,334 - +0.8 679,334 - -0.0 679,345 - +0.2 679,356 - -2.4 679,397 + +0.0 679,404 - -1.1 679,419 + Shew_0600 0.14 +0.4 679,445 - Shew_0600 0.23 -0.7 679,447 - Shew_0600 0.23 +1.1 679,543 - Shew_0600 0.54 +0.2 679,551 - Shew_0600 0.56 -0.7 679,553 + Shew_0600 0.57 +0.7 679,553 + Shew_0600 0.57 -1.8 679,556 - Shew_0600 0.58 +0.0 679,561 - Shew_0600 0.59 +0.3 679,561 - Shew_0600 0.59 +0.2 679,561 - Shew_0600 0.59 -0.1 679,561 - Shew_0600 0.59 -0.9 679,561 - Shew_0600 0.59 +0.9 679,580 + Shew_0600 0.65 +2.2 679,580 + Shew_0600 0.65 -0.3 679,587 + Shew_0600 0.68 +0.1 679,587 + Shew_0600 0.68 +0.3 679,588 - Shew_0600 0.68 +0.2 679,588 - Shew_0600 0.68 -0.2 679,588 - Shew_0600 0.68 +0.3 679,588 - Shew_0600 0.68 -1.6 679,588 - Shew_0600 0.68 +0.8 679,588 - Shew_0600 0.68 +0.6 679,593 - Shew_0600 0.70 +0.1 679,597 + Shew_0600 0.71 -1.5 679,611 + Shew_0600 0.75 +0.4 679,657 + -1.2 679,702 + +1.1 679,702 + +0.2 679,710 - -0.2 679,710 - +0.3 679,710 - -0.9 679,730 - +0.1 679,730 - +2.6 679,730 - -0.6 679,730 - +0.9 679,730 - +0.1 679,737 + -0.0 679,745 - +0.0 679,745 - -0.1 679,745 - +0.2 679,745 - -0.8 679,745 - +0.5 679,746 + +0.6 679,754 - +0.4 679,754 - -0.3 679,754 - -1.7 679,754 - +0.2 679,754 - -0.5 679,758 + -1.1 679,758 + +0.1 679,758 + -0.4 679,763 + +0.3 679,766 - +0.7 679,766 - +0.3 679,803 + -0.4 679,803 + +1.1 679,811 - +1.8 679,811 - +0.1 679,811 - +0.2 679,855 + +1.1 679,907 + -0.0 679,907 + +0.2 679,915 + +0.3 679,915 - +0.4 679,915 - +0.2 679,915 - +0.4 679,915 - +0.1 679,915 - -0.6 679,915 - +0.8 679,915 - +1.3 679,915 + +0.9 679,915 - -2.0 679,923 - +0.5 679,923 - +0.5 679,930 - +1.1 679,968 + -1.1 679,983 - -2.2 680,003 - +1.4 680,060 + +0.6 680,060 + -1.7 680,060 + +0.6 680,060 + -0.0 680,060 + +0.4 680,060 + +0.1 680,066 + +0.9 680,068 - +0.5 680,068 - +0.6 680,068 - +0.3 680,068 - +0.2 680,074 + +0.7 680,075 - +0.3 680,082 - -2.4 680,084 + +0.3 680,089 - +0.2 680,116 + +0.2 680,164 + +0.9 680,164 + -0.7 680,164 + -0.2 680,164 + +0.5 680,172 - +0.4 680,172 - -0.1 680,172 + -0.0 680,174 + -0.2 680,220 + +0.0 680,220 + +0.5 680,221 + +0.8 680,223 - -1.4 680,228 - -0.4 680,234 + +0.6 680,234 + +0.7 680,234 + +1.5 680,234 + +0.4 680,234 + +0.2 680,234 + -0.4 680,234 + +0.6 680,234 + +0.1 680,242 - -0.8 680,242 - -1.1 680,242 - +0.4 680,242 - -0.3 680,242 - -0.1 680,242 - +0.2 680,242 - -0.1 680,242 - -2.4 680,244 + +0.3 680,323 + Shew_0601 0.10 +0.3 680,532 + Shew_0601 0.64 +0.1 680,538 + Shew_0601 0.66 -2.4 680,546 - Shew_0601 0.68 +0.6 680,561 + Shew_0601 0.72 -1.0 680,574 - Shew_0601 0.75 -0.5 680,660 - +0.6 680,706 - +0.2 680,725 + +0.8 680,733 - +0.1 680,733 + -0.1 680,733 - -0.1 680,733 - +1.5 680,992 - -0.4 681,145 + +0.0 681,153 - +1.2 681,153 - +0.0 681,153 - +0.7 681,153 - -0.4 681,156 + +0.0 681,166 - -0.0 681,225 + -0.2 681,288 + +0.0 681,293 + +0.1
Or see this region's nucleotide sequence