Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0506 and Shew_0507 are separated by 127 nucleotides Shew_0507 and Shew_0508 are separated by 73 nucleotides
Shew_0506: Shew_0506 - LysR family transcriptional regulator (RefSeq), at 564,571 to 565,488
_0506
Shew_0507: Shew_0507 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 565,616 to 566,707
_0507
Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938
_0508
Position (kb) 565
566
567 Strain fitness (log2 ratio) -1
0
1
2
3 at 564.723 kb on + strand, within Shew_0506 at 564.728 kb on + strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.736 kb on - strand, within Shew_0506 at 564.977 kb on - strand, within Shew_0506 at 565.411 kb on - strand at 565.443 kb on + strand at 565.830 kb on + strand, within Shew_0507 at 565.909 kb on + strand, within Shew_0507 at 565.917 kb on - strand, within Shew_0507 at 566.090 kb on + strand, within Shew_0507 at 566.103 kb on - strand, within Shew_0507 at 566.344 kb on - strand, within Shew_0507 at 566.613 kb on - strand at 567.025 kb on + strand, within Shew_0508 at 567.025 kb on + strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.033 kb on - strand, within Shew_0508 at 567.044 kb on + strand, within Shew_0508 at 567.065 kb on + strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.073 kb on - strand, within Shew_0508 at 567.397 kb on + strand, within Shew_0508 at 567.595 kb on - strand, within Shew_0508 at 567.665 kb on - strand, within Shew_0508 at 567.680 kb on - strand, within Shew_0508
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 564,723 + Shew_0506 0.17 -1.0 564,728 + Shew_0506 0.17 +0.3 564,731 - Shew_0506 0.17 +0.4 564,731 - Shew_0506 0.17 -0.7 564,736 - Shew_0506 0.18 +0.7 564,977 - Shew_0506 0.44 +0.5 565,411 - -0.7 565,443 + -1.0 565,830 + Shew_0507 0.20 +1.2 565,909 + Shew_0507 0.27 +0.2 565,917 - Shew_0507 0.28 +0.8 566,090 + Shew_0507 0.43 -0.1 566,103 - Shew_0507 0.45 +0.3 566,344 - Shew_0507 0.67 +1.0 566,613 - +0.1 567,025 + Shew_0508 0.21 +3.4 567,025 + Shew_0508 0.21 +0.7 567,033 - Shew_0508 0.22 +0.6 567,033 - Shew_0508 0.22 +0.5 567,044 + Shew_0508 0.23 +0.1 567,065 + Shew_0508 0.25 +0.3 567,073 - Shew_0508 0.25 +1.1 567,073 - Shew_0508 0.25 +0.6 567,397 + Shew_0508 0.53 -0.6 567,595 - Shew_0508 0.70 +0.7 567,665 - Shew_0508 0.76 -1.2 567,680 - Shew_0508 0.78 +1.7
Or see this region's nucleotide sequence