Strain Fitness in Shewanella loihica PV-4 around Shew_0365

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0364 and Shew_R0018 are separated by 189 nucleotidesShew_R0018 and Shew_0365 are separated by 499 nucleotidesShew_0365 and Shew_0366 are separated by 140 nucleotides Shew_0364: Shew_0364 - MshA, mannose-sensitive haemaglutinin (RefSeq), at 412,388 to 412,879 _0364 Shew_R0018: Shew_R0018 - tRNA-Ser (RefSeq), at 413,069 to 413,159 _R0018 Shew_0365: Shew_0365 - hypothetical protein (RefSeq), at 413,659 to 414,147 _0365 Shew_0366: Shew_0366 - ubiquinol oxidase, subunit II (RefSeq), at 414,288 to 415,238 _0366 Position (kb) 413 414 415Strain fitness (log2 ratio) -1 0 1at 413.464 kb on - strandat 413.897 kb on + strand, within Shew_0365at 413.905 kb on - strand, within Shew_0365at 414.338 kb on - strandat 414.347 kb on + strandat 414.452 kb on + strand, within Shew_0366at 414.783 kb on + strand, within Shew_0366at 414.783 kb on + strand, within Shew_0366at 414.829 kb on - strand, within Shew_0366

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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413,464 - +0.6
413,897 + Shew_0365 0.49 +0.7
413,905 - Shew_0365 0.50 +0.7
414,338 - +1.5
414,347 + +0.4
414,452 + Shew_0366 0.17 -0.5
414,783 + Shew_0366 0.52 -0.0
414,783 + Shew_0366 0.52 +0.2
414,829 - Shew_0366 0.57 +0.1

Or see this region's nucleotide sequence