Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0347 and Shew_0348 are separated by 437 nucleotides Shew_0348 and Shew_0349 are separated by 81 nucleotides Shew_0349 and Shew_0350 are separated by 66 nucleotides
Shew_0347: Shew_0347 - cytochrome c assembly protein (RefSeq), at 394,380 to 396,371
_0347
Shew_0348: Shew_0348 - cytochrome c, putative (RefSeq), at 396,809 to 398,848
_0348
Shew_0349: Shew_0349 - rhodanese domain-containing protein (RefSeq), at 398,930 to 399,355
_0349
Shew_0350: Shew_0350 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 399,422 to 400,225
_0350
Position (kb) 396
397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 396.023 kb on - strand, within Shew_0347 at 396.040 kb on - strand, within Shew_0347 at 396.055 kb on - strand, within Shew_0347 at 396.170 kb on - strand, within Shew_0347 at 396.180 kb on + strand at 396.227 kb on + strand at 396.234 kb on - strand at 396.260 kb on + strand at 396.275 kb on - strand at 396.290 kb on + strand at 396.356 kb on - strand at 396.392 kb on + strand at 396.416 kb on - strand at 396.416 kb on - strand at 396.420 kb on + strand at 396.420 kb on + strand at 396.828 kb on + strand at 396.831 kb on - strand at 396.855 kb on - strand at 396.890 kb on + strand at 396.898 kb on - strand at 396.961 kb on + strand at 396.961 kb on + strand at 397.074 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.367 kb on - strand, within Shew_0348 at 397.458 kb on + strand, within Shew_0348 at 397.504 kb on + strand, within Shew_0348 at 397.515 kb on + strand, within Shew_0348 at 397.528 kb on - strand, within Shew_0348 at 397.643 kb on + strand, within Shew_0348 at 397.750 kb on + strand, within Shew_0348 at 397.873 kb on + strand, within Shew_0348 at 398.075 kb on - strand, within Shew_0348 at 398.410 kb on + strand, within Shew_0348 at 398.847 kb on - strand at 399.136 kb on + strand, within Shew_0349 at 399.222 kb on + strand, within Shew_0349 at 399.272 kb on + strand, within Shew_0349 at 399.484 kb on - strand at 399.485 kb on - strand at 399.485 kb on - strand at 399.485 kb on - strand at 399.490 kb on - strand at 399.495 kb on - strand at 399.630 kb on - strand, within Shew_0350 at 399.669 kb on - strand, within Shew_0350 at 399.766 kb on - strand, within Shew_0350
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 396,023 - Shew_0347 0.82 +0.5 396,040 - Shew_0347 0.83 +1.6 396,055 - Shew_0347 0.84 +0.3 396,170 - Shew_0347 0.90 -0.7 396,180 + +0.6 396,227 + -2.3 396,234 - -0.9 396,260 + +0.2 396,275 - +0.1 396,290 + +0.4 396,356 - +0.3 396,392 + +0.1 396,416 - +0.0 396,416 - +0.2 396,420 + -0.7 396,420 + -1.6 396,828 + +0.3 396,831 - +0.1 396,855 - +1.2 396,890 + +0.1 396,898 - -1.0 396,961 + +1.1 396,961 + -0.1 397,074 + Shew_0348 0.13 +0.2 397,153 + Shew_0348 0.17 +0.0 397,153 + Shew_0348 0.17 -0.2 397,163 + Shew_0348 0.17 +0.0 397,163 + Shew_0348 0.17 -0.3 397,171 - Shew_0348 0.18 +0.4 397,171 - Shew_0348 0.18 +0.5 397,367 - Shew_0348 0.27 -2.3 397,458 + Shew_0348 0.32 -0.1 397,504 + Shew_0348 0.34 +0.1 397,515 + Shew_0348 0.35 +0.1 397,528 - Shew_0348 0.35 +0.4 397,643 + Shew_0348 0.41 +3.2 397,750 + Shew_0348 0.46 -0.9 397,873 + Shew_0348 0.52 -2.1 398,075 - Shew_0348 0.62 +0.4 398,410 + Shew_0348 0.78 -0.6 398,847 - +0.3 399,136 + Shew_0349 0.48 -0.3 399,222 + Shew_0349 0.69 -0.5 399,272 + Shew_0349 0.80 +0.2 399,484 - -0.0 399,485 - -0.1 399,485 - +0.0 399,485 - +0.2 399,490 - -0.1 399,495 - -0.2 399,630 - Shew_0350 0.26 +1.0 399,669 - Shew_0350 0.31 -0.3 399,766 - Shew_0350 0.43 +0.8
Or see this region's nucleotide sequence