Strain Fitness in Shewanella loihica PV-4 around Shew_0059

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0057 and Shew_0058 are separated by 167 nucleotidesShew_0058 and Shew_0059 are separated by 51 nucleotidesShew_0059 and Shew_0060 are separated by 27 nucleotidesShew_0060 and Shew_0061 are separated by 50 nucleotides Shew_0057: Shew_0057 - cytoplasmic chaperone TorD family protein (RefSeq), at 68,787 to 69,452 _0057 Shew_0058: Shew_0058 - twin-arginine translocation pathway signal (RefSeq), at 69,620 to 69,820 _0058 Shew_0059: Shew_0059 - molybdopterin oxidoreductase (RefSeq), at 69,872 to 72,721 _0059 Shew_0060: Shew_0060 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 72,749 to 73,339 _0060 Shew_0061: Shew_0061 - formate dehydrogenase, gamma subunit (RefSeq), at 73,390 to 74,397 _0061 Position (kb) 69 70 71 72 73Strain fitness (log2 ratio) -1 0 1 2 3at 68.991 kb on - strand, within Shew_0057at 69.146 kb on + strand, within Shew_0057at 69.329 kb on + strand, within Shew_0057at 69.472 kb on - strandat 69.506 kb on + strandat 69.638 kb on + strandat 69.671 kb on + strand, within Shew_0058at 69.671 kb on + strand, within Shew_0058at 69.679 kb on - strand, within Shew_0058at 69.679 kb on - strand, within Shew_0058at 69.679 kb on - strand, within Shew_0058at 69.679 kb on - strand, within Shew_0058at 69.681 kb on + strand, within Shew_0058at 69.757 kb on + strand, within Shew_0058at 69.855 kb on + strandat 69.863 kb on - strandat 69.934 kb on - strandat 70.083 kb on + strandat 70.367 kb on - strand, within Shew_0059at 70.381 kb on + strand, within Shew_0059at 70.419 kb on - strand, within Shew_0059at 70.601 kb on + strand, within Shew_0059at 71.257 kb on + strand, within Shew_0059at 71.265 kb on - strand, within Shew_0059at 71.375 kb on - strand, within Shew_0059at 71.405 kb on - strand, within Shew_0059at 71.488 kb on - strand, within Shew_0059at 71.490 kb on + strand, within Shew_0059at 71.490 kb on + strand, within Shew_0059at 71.495 kb on + strand, within Shew_0059at 71.503 kb on - strand, within Shew_0059at 71.503 kb on - strand, within Shew_0059at 71.664 kb on - strand, within Shew_0059at 71.677 kb on + strand, within Shew_0059at 71.687 kb on + strand, within Shew_0059at 71.953 kb on + strand, within Shew_0059at 71.970 kb on - strand, within Shew_0059at 72.064 kb on + strand, within Shew_0059at 72.122 kb on - strand, within Shew_0059at 72.192 kb on - strand, within Shew_0059at 72.204 kb on - strand, within Shew_0059at 72.204 kb on - strand, within Shew_0059at 72.261 kb on + strand, within Shew_0059at 72.261 kb on + strand, within Shew_0059at 72.266 kb on + strand, within Shew_0059at 72.269 kb on - strand, within Shew_0059at 72.271 kb on + strand, within Shew_0059at 72.372 kb on - strand, within Shew_0059at 72.415 kb on + strand, within Shew_0059at 72.556 kb on - strandat 72.614 kb on - strandat 72.629 kb on - strandat 72.644 kb on + strandat 72.987 kb on + strand, within Shew_0060at 72.987 kb on + strand, within Shew_0060at 72.987 kb on + strand, within Shew_0060at 72.995 kb on - strand, within Shew_0060at 73.003 kb on - strand, within Shew_0060at 73.133 kb on + strand, within Shew_0060at 73.141 kb on - strand, within Shew_0060at 73.206 kb on + strand, within Shew_0060at 73.365 kb on - strandat 73.374 kb on + strandat 73.638 kb on + strand, within Shew_0061

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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68,991 - Shew_0057 0.31 +1.5
69,146 + Shew_0057 0.54 +1.5
69,329 + Shew_0057 0.81 +1.7
69,472 - +1.1
69,506 + +0.0
69,638 + +0.8
69,671 + Shew_0058 0.25 +0.7
69,671 + Shew_0058 0.25 +0.5
69,679 - Shew_0058 0.29 +0.3
69,679 - Shew_0058 0.29 +1.2
69,679 - Shew_0058 0.29 -0.3
69,679 - Shew_0058 0.29 +0.2
69,681 + Shew_0058 0.30 +0.6
69,757 + Shew_0058 0.68 +0.4
69,855 + +0.8
69,863 - +0.8
69,934 - +0.7
70,083 + +0.6
70,367 - Shew_0059 0.17 +1.1
70,381 + Shew_0059 0.18 +0.7
70,419 - Shew_0059 0.19 +2.2
70,601 + Shew_0059 0.26 +1.0
71,257 + Shew_0059 0.49 +1.2
71,265 - Shew_0059 0.49 +1.0
71,375 - Shew_0059 0.53 +0.1
71,405 - Shew_0059 0.54 -0.0
71,488 - Shew_0059 0.57 +1.1
71,490 + Shew_0059 0.57 +0.6
71,490 + Shew_0059 0.57 +0.7
71,495 + Shew_0059 0.57 +0.9
71,503 - Shew_0059 0.57 +0.5
71,503 - Shew_0059 0.57 +0.4
71,664 - Shew_0059 0.63 +1.1
71,677 + Shew_0059 0.63 +1.7
71,687 + Shew_0059 0.64 +0.7
71,953 + Shew_0059 0.73 +1.0
71,970 - Shew_0059 0.74 +1.4
72,064 + Shew_0059 0.77 +0.5
72,122 - Shew_0059 0.79 +1.0
72,192 - Shew_0059 0.81 +0.5
72,204 - Shew_0059 0.82 +0.4
72,204 - Shew_0059 0.82 +1.0
72,261 + Shew_0059 0.84 +0.8
72,261 + Shew_0059 0.84 +0.7
72,266 + Shew_0059 0.84 +0.6
72,269 - Shew_0059 0.84 -0.8
72,271 + Shew_0059 0.84 +0.8
72,372 - Shew_0059 0.88 +1.1
72,415 + Shew_0059 0.89 +0.5
72,556 - +2.9
72,614 - +0.5
72,629 - +0.6
72,644 + +0.7
72,987 + Shew_0060 0.40 +0.8
72,987 + Shew_0060 0.40 +0.6
72,987 + Shew_0060 0.40 +0.7
72,995 - Shew_0060 0.42 +0.6
73,003 - Shew_0060 0.43 +1.5
73,133 + Shew_0060 0.65 +0.7
73,141 - Shew_0060 0.66 +0.5
73,206 + Shew_0060 0.77 -0.5
73,365 - +1.2
73,374 + +0.7
73,638 + Shew_0061 0.25 -0.1

Or see this region's nucleotide sequence