Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0051 and Shew_0052 are separated by 95 nucleotides Shew_0052 and Shew_0053 are separated by 23 nucleotides
Shew_0051: Shew_0051 - cyclic nucleotide-binding protein (RefSeq), at 61,803 to 63,692
_0051
Shew_0052: Shew_0052 - DNA binding domain-containing protein (RefSeq), at 63,788 to 64,693
_0052
Shew_0053: Shew_0053 - formate dehydrogenase, subunit FdhD (RefSeq), at 64,717 to 65,562
_0053
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1 at 62.993 kb on + strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.001 kb on - strand, within Shew_0051 at 63.141 kb on - strand, within Shew_0051 at 63.293 kb on + strand, within Shew_0051 at 63.301 kb on - strand, within Shew_0051 at 63.301 kb on - strand, within Shew_0051 at 63.303 kb on + strand, within Shew_0051 at 63.333 kb on + strand, within Shew_0051 at 63.426 kb on - strand, within Shew_0051 at 63.474 kb on + strand, within Shew_0051 at 63.474 kb on + strand, within Shew_0051 at 63.526 kb on + strand at 63.806 kb on - strand at 63.834 kb on + strand at 63.836 kb on + strand at 64.081 kb on + strand, within Shew_0052 at 64.089 kb on - strand, within Shew_0052 at 64.089 kb on - strand, within Shew_0052 at 64.094 kb on - strand, within Shew_0052 at 64.284 kb on + strand, within Shew_0052 at 64.292 kb on - strand, within Shew_0052 at 64.292 kb on - strand, within Shew_0052 at 64.326 kb on + strand, within Shew_0052 at 64.334 kb on + strand, within Shew_0052 at 64.611 kb on + strand at 64.619 kb on - strand at 64.673 kb on - strand at 64.701 kb on + strand at 64.836 kb on + strand, within Shew_0053 at 64.844 kb on - strand, within Shew_0053 at 64.919 kb on - strand, within Shew_0053 at 64.972 kb on - strand, within Shew_0053 at 64.990 kb on + strand, within Shew_0053 at 64.998 kb on - strand, within Shew_0053 at 65.037 kb on - strand, within Shew_0053 at 65.053 kb on - strand, within Shew_0053 at 65.053 kb on - strand, within Shew_0053 at 65.055 kb on + strand, within Shew_0053 at 65.055 kb on + strand, within Shew_0053 at 65.055 kb on + strand, within Shew_0053 at 65.055 kb on + strand, within Shew_0053 at 65.055 kb on + strand, within Shew_0053 at 65.062 kb on + strand, within Shew_0053 at 65.063 kb on - strand, within Shew_0053 at 65.063 kb on - strand, within Shew_0053 at 65.063 kb on - strand, within Shew_0053 at 65.070 kb on - strand, within Shew_0053 at 65.199 kb on - strand, within Shew_0053 at 65.394 kb on + strand, within Shew_0053 at 65.528 kb on + strand at 65.536 kb on - strand at 65.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 62,993 + Shew_0051 0.63 +0.2 63,001 - Shew_0051 0.63 +0.0 63,001 - Shew_0051 0.63 -1.6 63,001 - Shew_0051 0.63 +0.5 63,141 - Shew_0051 0.71 +0.2 63,293 + Shew_0051 0.79 +0.4 63,301 - Shew_0051 0.79 +0.1 63,301 - Shew_0051 0.79 -0.8 63,303 + Shew_0051 0.79 -0.5 63,333 + Shew_0051 0.81 -0.8 63,426 - Shew_0051 0.86 +0.3 63,474 + Shew_0051 0.88 +0.5 63,474 + Shew_0051 0.88 +0.5 63,526 + -0.0 63,806 - +0.2 63,834 + -0.0 63,836 + +0.3 64,081 + Shew_0052 0.32 -1.1 64,089 - Shew_0052 0.33 -0.1 64,089 - Shew_0052 0.33 -0.5 64,094 - Shew_0052 0.34 +0.2 64,284 + Shew_0052 0.55 +0.1 64,292 - Shew_0052 0.56 -0.9 64,292 - Shew_0052 0.56 -0.2 64,326 + Shew_0052 0.59 +0.7 64,334 + Shew_0052 0.60 +0.2 64,611 + +0.3 64,619 - +0.0 64,673 - -0.5 64,701 + +0.4 64,836 + Shew_0053 0.14 +0.0 64,844 - Shew_0053 0.15 +0.2 64,919 - Shew_0053 0.24 +0.7 64,972 - Shew_0053 0.30 +0.6 64,990 + Shew_0053 0.32 -0.4 64,998 - Shew_0053 0.33 +0.1 65,037 - Shew_0053 0.38 +0.4 65,053 - Shew_0053 0.40 +0.5 65,053 - Shew_0053 0.40 +0.9 65,055 + Shew_0053 0.40 -0.8 65,055 + Shew_0053 0.40 +0.5 65,055 + Shew_0053 0.40 +0.1 65,055 + Shew_0053 0.40 +0.6 65,055 + Shew_0053 0.40 +0.7 65,062 + Shew_0053 0.41 -0.2 65,063 - Shew_0053 0.41 +0.2 65,063 - Shew_0053 0.41 +0.6 65,063 - Shew_0053 0.41 -0.1 65,070 - Shew_0053 0.42 +0.7 65,199 - Shew_0053 0.57 -0.0 65,394 + Shew_0053 0.80 -0.4 65,528 + +0.7 65,536 - +1.7 65,594 + +0.0
Or see this region's nucleotide sequence