Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0039 and Shew_0040 are separated by 508 nucleotides Shew_0040 and Shew_0041 are separated by 312 nucleotides
Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818
_0039
Shew_0040: Shew_0040 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 46,327 to 46,980
_0040
Shew_0041: Shew_0041 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 47,293 to 50,577
_0041
Position (kb) 46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 45.407 kb on - strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.592 kb on + strand, within Shew_0039 at 45.595 kb on - strand, within Shew_0039 at 45.739 kb on - strand at 45.875 kb on + strand at 45.926 kb on - strand at 45.982 kb on - strand at 46.049 kb on - strand at 46.222 kb on - strand at 46.459 kb on - strand, within Shew_0040 at 46.466 kb on - strand, within Shew_0040 at 46.486 kb on - strand, within Shew_0040 at 46.503 kb on - strand, within Shew_0040 at 46.782 kb on - strand, within Shew_0040 at 46.796 kb on + strand, within Shew_0040 at 46.895 kb on - strand, within Shew_0040 at 47.141 kb on - strand at 47.291 kb on - strand at 47.467 kb on - strand at 47.793 kb on - strand, within Shew_0041 at 47.901 kb on + strand, within Shew_0041 at 47.930 kb on + strand, within Shew_0041
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 45,407 - Shew_0039 0.80 -0.7 45,525 + Shew_0039 0.86 +0.6 45,525 + Shew_0039 0.86 -0.3 45,525 + Shew_0039 0.86 +0.1 45,592 + Shew_0039 0.89 -0.5 45,595 - Shew_0039 0.89 +0.5 45,739 - -0.1 45,875 + +0.0 45,926 - +0.2 45,982 - +0.5 46,049 - +0.3 46,222 - -1.6 46,459 - Shew_0040 0.20 +0.4 46,466 - Shew_0040 0.21 -0.1 46,486 - Shew_0040 0.24 -0.4 46,503 - Shew_0040 0.27 -1.4 46,782 - Shew_0040 0.70 -0.5 46,796 + Shew_0040 0.72 +0.3 46,895 - Shew_0040 0.87 -0.1 47,141 - -2.5 47,291 - +0.2 47,467 - +0.1 47,793 - Shew_0041 0.15 -0.8 47,901 + Shew_0041 0.19 -3.5 47,930 + Shew_0041 0.19 +0.1
Or see this region's nucleotide sequence