Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2164

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
2,244,682	-				+1.9
2,244,682	-				-0.7
2,244,716	+				-0.8
2,244,740	+				+0.1
2,244,764	-		Synpcc7942_2162	0.18	-0.7
2,244,787	-		Synpcc7942_2162	0.29	+2.2
2,244,804	-		Synpcc7942_2162	0.37	-1.1
2,244,836	+		Synpcc7942_2162	0.51	+0.4
2,244,839	-		Synpcc7942_2162	0.53	-1.7
2,244,839	-		Synpcc7942_2162	0.53	+1.1
2,244,844	-		Synpcc7942_2162	0.55	+2.7
2,244,875	-		Synpcc7942_2162	0.69	-1.3
2,244,923	-				-0.9
2,244,923	-				+2.1
2,244,925	+				-0.6
2,244,925	+				+0.1
2,244,967	+				-1.4
2,244,975	-				+2.9
2,245,000	+				-1.5
2,245,033	+				-2.4
2,245,033	+				+2.7
2,245,033	+				+0.3
2,245,040	+				+0.3
2,245,041	-				-0.6
2,245,078	+				-1.6
2,245,092	-		Synpcc7942_2163	0.11	+0.4
2,245,125	-		Synpcc7942_2163	0.18	-1.6
2,245,139	+		Synpcc7942_2163	0.21	+3.8
2,245,140	-		Synpcc7942_2163	0.21	-1.0
2,245,147	-		Synpcc7942_2163	0.22	+0.9
2,245,147	-		Synpcc7942_2163	0.22	-2.1
2,245,163	-		Synpcc7942_2163	0.26	-0.5
2,245,185	+		Synpcc7942_2163	0.30	-2.1
2,245,210	+		Synpcc7942_2163	0.35	+1.4
2,245,266	+		Synpcc7942_2163	0.47	-1.0
2,245,295	+		Synpcc7942_2163	0.53	+0.0
2,245,308	-				+2.0
2,245,318	-		Synpcc7942_2163	0.57	+0.4
2,245,319	-		Synpcc7942_2163	0.58	+1.9
2,245,326	-		Synpcc7942_2163	0.59	+4.1
2,245,329	-		Synpcc7942_2163	0.60	-0.6
2,245,346	-		Synpcc7942_2163	0.63	-2.4
2,245,383	+		Synpcc7942_2163	0.71	-0.3
2,245,393	+		Synpcc7942_2163	0.73	-1.7
2,245,393	+		Synpcc7942_2163	0.73	-0.8
2,245,393	+		Synpcc7942_2163	0.73	-0.4
2,245,393	+		Synpcc7942_2163	0.73	+1.2
2,245,401	-		Synpcc7942_2163	0.74	+0.5
2,245,401	-		Synpcc7942_2163	0.74	-0.1
2,245,401	-		Synpcc7942_2163	0.74	+0.1
2,245,401	-		Synpcc7942_2163	0.74	-0.8
2,245,401	-		Synpcc7942_2163	0.74	+0.8
2,245,410	+		Synpcc7942_2163	0.76	-0.5
2,245,421	-		Synpcc7942_2163	0.79	+0.3
2,245,423	+		Synpcc7942_2163	0.79	+3.3
2,245,453	+		Synpcc7942_2163	0.85	-2.4
2,245,516	-				+2.6
2,245,520	+				+1.1
2,245,530	+				-0.8
2,245,530	+				+1.0
2,245,530	+				-1.4
2,245,530	+				-0.5
2,245,530	+				-0.7
2,245,530	+				-2.4
2,245,538	-				-0.7
2,245,538	-				+2.6
2,245,547	+				+1.0
2,245,553	-				+4.2
2,245,555	-				+0.4
2,245,603	+				-1.4
2,245,603	+				-1.8
2,245,634	+				+0.6
2,245,639	+				-0.6
2,245,688	-				+4.4
2,245,697	+				-0.1
2,245,700	+				+4.3
2,245,732	+				-0.9
2,245,748	-		Synpcc7942_2164	0.10	-1.7
2,245,785	-		Synpcc7942_2164	0.13	+0.1
2,245,798	-		Synpcc7942_2164	0.14	+0.4
2,245,834	-		Synpcc7942_2164	0.16	-1.8
2,245,878	-		Synpcc7942_2164	0.20	+3.2
2,245,905	+		Synpcc7942_2164	0.22	-0.1
2,245,913	-		Synpcc7942_2164	0.22	+1.2
2,245,941	+		Synpcc7942_2164	0.24	-0.6
2,245,941	+		Synpcc7942_2164	0.24	-2.0
2,245,944	-		Synpcc7942_2164	0.24	+0.7
2,245,945	-		Synpcc7942_2164	0.24	-1.6
2,245,946	+		Synpcc7942_2164	0.24	+0.3
2,245,959	-		Synpcc7942_2164	0.25	+1.0
2,245,960	-		Synpcc7942_2164	0.25	+1.3
2,245,982	-		Synpcc7942_2164	0.27	-1.2
2,246,060	+		Synpcc7942_2164	0.33	-1.6
2,246,061	-		Synpcc7942_2164	0.33	+1.0
2,246,117	+		Synpcc7942_2164	0.37	-0.2
2,246,130	-		Synpcc7942_2164	0.38	-1.3
2,246,133	+		Synpcc7942_2164	0.38	-1.6
2,246,133	+		Synpcc7942_2164	0.38	-1.3
2,246,133	+		Synpcc7942_2164	0.38	-1.3
2,246,133	+		Synpcc7942_2164	0.38	-0.1
2,246,133	+		Synpcc7942_2164	0.38	-1.3
2,246,133	+		Synpcc7942_2164	0.38	+0.4
2,246,133	+		Synpcc7942_2164	0.38	-2.0
2,246,140	-		Synpcc7942_2164	0.38	-0.2
2,246,141	-		Synpcc7942_2164	0.39	-1.6
2,246,141	-		Synpcc7942_2164	0.39	+1.8
2,246,141	-		Synpcc7942_2164	0.39	+1.6
2,246,141	-		Synpcc7942_2164	0.39	+0.2
2,246,141	-		Synpcc7942_2164	0.39	-0.8
2,246,149	-		Synpcc7942_2164	0.39	+0.1
2,246,151	-		Synpcc7942_2164	0.39	+2.7
2,246,151	-		Synpcc7942_2164	0.39	-0.2
2,246,173	+		Synpcc7942_2164	0.41	-1.5
2,246,181	-		Synpcc7942_2164	0.41	+0.0
2,246,181	-		Synpcc7942_2164	0.41	+2.6
2,246,190	+		Synpcc7942_2164	0.42	-0.2
2,246,195	+		Synpcc7942_2164	0.42	-0.2
2,246,203	-		Synpcc7942_2164	0.43	-0.4
2,246,218	+		Synpcc7942_2164	0.44	+1.0
2,246,218	+		Synpcc7942_2164	0.44	-1.0
2,246,258	+		Synpcc7942_2164	0.47	+0.6
2,246,260	+		Synpcc7942_2164	0.47	+0.6
2,246,277	-		Synpcc7942_2164	0.48	+0.9
2,246,282	+		Synpcc7942_2164	0.49	+0.2
2,246,305	-		Synpcc7942_2164	0.50	-3.0
2,246,307	+		Synpcc7942_2164	0.51	-0.5
2,246,322	+		Synpcc7942_2164	0.52	-0.2
2,246,343	+		Synpcc7942_2164	0.53	+1.6
2,246,343	+		Synpcc7942_2164	0.53	-1.0
2,246,349	+		Synpcc7942_2164	0.54	+0.2
2,246,350	+		Synpcc7942_2164	0.54	-1.3
2,246,357	-		Synpcc7942_2164	0.54	+1.4
2,246,357	-		Synpcc7942_2164	0.54	-1.4
2,246,358	-		Synpcc7942_2164	0.54	+0.0
2,246,372	-		Synpcc7942_2164	0.55	-0.9
2,246,382	-		Synpcc7942_2164	0.56	+1.2
2,246,386	+		Synpcc7942_2164	0.56	-1.9
2,246,386	+		Synpcc7942_2164	0.56	-1.6
2,246,386	+		Synpcc7942_2164	0.56	+0.4
2,246,386	+		Synpcc7942_2164	0.56	-0.1
2,246,386	+		Synpcc7942_2164	0.56	-1.6
2,246,394	-		Synpcc7942_2164	0.57	-1.0
2,246,474	-		Synpcc7942_2164	0.63	-0.3
2,246,474	-		Synpcc7942_2164	0.63	+0.2
2,246,515	-		Synpcc7942_2164	0.66	+0.2
2,246,519	+		Synpcc7942_2164	0.66	+0.1
2,246,558	-		Synpcc7942_2164	0.69	+0.1
2,246,558	-		Synpcc7942_2164	0.69	-1.1
2,246,588	+		Synpcc7942_2164	0.71	+1.9
2,246,588	+		Synpcc7942_2164	0.71	-0.6
2,246,591	-		Synpcc7942_2164	0.71	-0.6
2,246,596	-		Synpcc7942_2164	0.71	-0.6
2,246,641	-		Synpcc7942_2164	0.75	-0.5
2,246,662	-		Synpcc7942_2164	0.76	-0.4
2,246,720	+		Synpcc7942_2164	0.80	+2.6
2,246,739	+		Synpcc7942_2164	0.82	+1.4
2,246,745	-		Synpcc7942_2164	0.82	+1.4
2,246,745	-		Synpcc7942_2164	0.82	+0.1
2,246,745	-		Synpcc7942_2164	0.82	-2.6
2,246,747	-		Synpcc7942_2164	0.82	-2.4
2,246,752	-		Synpcc7942_2164	0.83	-0.9
2,246,762	-		Synpcc7942_2164	0.83	+1.4
2,246,791	+				+1.0
2,246,832	-		Synpcc7942_2164	0.88	+0.6
2,246,845	-		Synpcc7942_2164	0.89	-1.6
2,246,846	-		Synpcc7942_2164	0.89	-0.1
2,246,862	-				-2.2
2,246,899	+				+2.0
2,246,925	+				+0.1
2,246,925	-				+0.4
2,246,925	-				+1.2
2,246,933	-				-3.6
2,246,954	-				+0.2
2,246,954	-				-0.8
2,246,964	-				-1.2
2,246,966	-				-1.7
2,247,045	-				-0.8
2,247,081	+		Synpcc7942_2165	0.24	+0.0
2,247,087	+		Synpcc7942_2165	0.26	+0.4
2,247,094	+		Synpcc7942_2165	0.28	+0.0
2,247,094	+		Synpcc7942_2165	0.28	-1.1
2,247,094	+		Synpcc7942_2165	0.28	+1.4
2,247,094	+		Synpcc7942_2165	0.28	+0.0
2,247,102	-		Synpcc7942_2165	0.30	+2.2
2,247,102	-		Synpcc7942_2165	0.30	-0.1
2,247,102	-		Synpcc7942_2165	0.30	+0.6
2,247,102	-		Synpcc7942_2165	0.30	+1.1
2,247,182	-		Synpcc7942_2165	0.51	-0.6
2,247,193	+		Synpcc7942_2165	0.54	-0.7
2,247,193	-		Synpcc7942_2165	0.54	-0.1
2,247,193	-		Synpcc7942_2165	0.54	-1.3
2,247,203	-		Synpcc7942_2165	0.56	-0.6
2,247,216	+		Synpcc7942_2165	0.60	-1.2
2,247,224	-		Synpcc7942_2165	0.62	-0.9
2,247,226	+		Synpcc7942_2165	0.62	-0.6
2,247,233	+		Synpcc7942_2165	0.64	+0.9
2,247,240	+		Synpcc7942_2165	0.66	+1.1
2,247,248	-		Synpcc7942_2165	0.68	-1.3
2,247,248	-		Synpcc7942_2165	0.68	-1.4
2,247,248	-		Synpcc7942_2165	0.68	-2.0
2,247,270	-		Synpcc7942_2165	0.74	+0.1
2,247,297	-		Synpcc7942_2165	0.81	+1.2
2,247,307	+		Synpcc7942_2165	0.83	-0.1
2,247,315	-		Synpcc7942_2165	0.86	+1.1
2,247,329	+		Synpcc7942_2165	0.89	-1.7
2,247,331	-		Synpcc7942_2165	0.90	-0.5
2,247,333	+				-2.5
2,247,357	+				+3.8
2,247,365	-				+0.2
2,247,401	+				+1.0
2,247,401	+				+0.4
2,247,409	-				+0.5
2,247,409	-				-2.9
2,247,409	-				+2.8
2,247,413	+				-0.5
2,247,413	+				-1.8
2,247,421	-				+0.2
2,247,421	-				-1.4
2,247,421	-				+2.2
2,247,421	-				-0.3
2,247,421	-				+0.0
2,247,431	-				+3.6
2,247,468	+				-0.9
2,247,469	+				-0.6
2,247,494	-				-1.2
2,247,567	+		Synpcc7942_2166	0.22	+0.2
2,247,567	+		Synpcc7942_2166	0.22	+1.7
2,247,567	+		Synpcc7942_2166	0.22	-0.8
2,247,567	+				+0.7
2,247,575	-		Synpcc7942_2166	0.24	-0.8
2,247,575	-		Synpcc7942_2166	0.24	-2.4
2,247,575	-		Synpcc7942_2166	0.24	-0.2
2,247,575	-		Synpcc7942_2166	0.24	+0.4
2,247,581	-		Synpcc7942_2166	0.26	-0.8
2,247,602	-		Synpcc7942_2166	0.31	+0.8
2,247,609	+		Synpcc7942_2166	0.33	-2.2
2,247,615	+				-0.6
2,247,623	+		Synpcc7942_2166	0.37	+0.4
2,247,623	+		Synpcc7942_2166	0.37	-0.4
2,247,623	+		Synpcc7942_2166	0.37	-0.9
2,247,631	-		Synpcc7942_2166	0.39	-1.7
2,247,631	-		Synpcc7942_2166	0.39	-2.3
2,247,631	-		Synpcc7942_2166	0.39	+4.4
2,247,653	-		Synpcc7942_2166	0.45	-0.3
2,247,655	+		Synpcc7942_2166	0.45	+3.4
2,247,663	-		Synpcc7942_2166	0.48	-0.8
2,247,719	-		Synpcc7942_2166	0.63	+1.0
2,247,728	-		Synpcc7942_2166	0.65	-0.4
2,247,730	+		Synpcc7942_2166	0.66	-1.6
2,247,730	+		Synpcc7942_2166	0.66	+0.9
2,247,730	+		Synpcc7942_2166	0.66	-4.0
2,247,730	+		Synpcc7942_2166	0.66	+2.8
2,247,730	+		Synpcc7942_2166	0.66	+4.7
2,247,730	+		Synpcc7942_2166	0.66	+1.1
2,247,738	+		Synpcc7942_2166	0.68	-1.0
2,247,738	-		Synpcc7942_2166	0.68	+3.4
2,247,738	-		Synpcc7942_2166	0.68	+2.4
2,247,738	-		Synpcc7942_2166	0.68	+2.8
2,247,738	-		Synpcc7942_2166	0.68	-0.5
2,247,738	-		Synpcc7942_2166	0.68	+0.9
2,247,738	-		Synpcc7942_2166	0.68	+0.2
2,247,738	-		Synpcc7942_2166	0.68	+0.3
2,247,739	+				-0.8
2,247,739	+		Synpcc7942_2166	0.68	-0.6
2,247,745	-		Synpcc7942_2166	0.70	+1.3
2,247,746	-		Synpcc7942_2166	0.70	+0.6
2,247,747	-		Synpcc7942_2166	0.70	-2.6
2,247,763	+		Synpcc7942_2166	0.74	-0.7
2,247,765	+		Synpcc7942_2166	0.75	-0.8
2,247,768	-		Synpcc7942_2166	0.76	+0.2
2,247,771	-		Synpcc7942_2166	0.77	+0.5
2,247,804	+		Synpcc7942_2166	0.85	-0.3
2,247,805	+		Synpcc7942_2166	0.86	-2.0
2,247,809	+		Synpcc7942_2166	0.87	-0.8
2,247,869	-				-0.6
2,247,873	-				+0.5
2,247,874	-				+0.8
2,247,879	+				-1.5
2,247,899	+				-2.8
2,247,902	-				+1.7
2,247,904	-				-0.7
2,247,916	+				-0.2
2,247,916	+				+2.7
2,247,924	-				-1.6
2,247,940	-				+0.3
2,247,940	-				-0.4
2,247,952	+				-0.6
2,247,952	+				-0.2
2,247,952	+				+3.2
2,247,974	-				-1.2
2,247,984	-				+0.9
2,247,986	+				-2.6
2,247,986	+				-3.2