Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2092

Experiment: Flask grown to static phase (untill yellowing)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Flask grown to static phase (untill yellowing)
2,172,286	-	ndhF3	Synpcc7942_2091	0.47	-3.2
2,172,353	+	ndhF3	Synpcc7942_2091	0.50	-2.3
2,172,361	-	ndhF3	Synpcc7942_2091	0.51	-2.4
2,172,361	-	ndhF3	Synpcc7942_2091	0.51	-4.7
2,172,378	+	ndhF3	Synpcc7942_2091	0.52	-2.2
2,172,384	+	ndhF3	Synpcc7942_2091	0.52	-2.4
2,172,405	+	ndhF3	Synpcc7942_2091	0.53	-1.6
2,172,501	+	ndhF3	Synpcc7942_2091	0.58	-1.2
2,172,518	+	ndhF3	Synpcc7942_2091	0.59	-3.3
2,172,526	-				-1.2
2,172,526	-	ndhF3	Synpcc7942_2091	0.60	-2.3
2,172,526	-	ndhF3	Synpcc7942_2091	0.60	-3.0
2,172,526	-	ndhF3	Synpcc7942_2091	0.60	-2.7
2,172,559	+				-1.7
2,172,565	-	ndhF3	Synpcc7942_2091	0.62	-1.9
2,172,590	-	ndhF3	Synpcc7942_2091	0.63	-3.7
2,172,616	-	ndhF3	Synpcc7942_2091	0.64	-3.1
2,172,616	-	ndhF3	Synpcc7942_2091	0.64	+0.7
2,172,627	-	ndhF3	Synpcc7942_2091	0.65	-3.6
2,172,655	-	ndhF3	Synpcc7942_2091	0.67	-3.0
2,172,715	-	ndhF3	Synpcc7942_2091	0.70	-2.4
2,172,725	+	ndhF3	Synpcc7942_2091	0.70	-4.1
2,172,786	-	ndhF3	Synpcc7942_2091	0.74	-2.8
2,172,839	+				+0.4
2,172,845	+	ndhF3	Synpcc7942_2091	0.77	-4.8
2,172,847	-	ndhF3	Synpcc7942_2091	0.77	-3.9
2,172,853	-	ndhF3	Synpcc7942_2091	0.77	-2.0
2,172,895	-	ndhF3	Synpcc7942_2091	0.80	-2.2
2,172,922	+	ndhF3	Synpcc7942_2091	0.81	-3.1
2,172,927	+	ndhF3	Synpcc7942_2091	0.81	-1.1
2,172,955	-	ndhF3	Synpcc7942_2091	0.83	-4.2
2,172,955	-	ndhF3	Synpcc7942_2091	0.83	-0.3
2,172,973	-	ndhF3	Synpcc7942_2091	0.84	-2.1
2,173,094	-				-3.4
2,173,113	+				-2.4
2,173,113	+				-1.3
2,173,142	-				-5.0
2,173,148	-				-2.4
2,173,167	+				-0.3
2,173,167	+				-1.3
2,173,175	-				-4.2
2,173,244	+				-5.0
2,173,246	+				-3.1
2,173,269	-				+5.3
2,173,290	-				-0.9
2,173,317	-				-3.7
2,173,319	+				-1.6
2,173,319	+				-0.8
2,173,345	-				-1.8
2,173,345	-				-2.2
2,173,458	+	ndhD3	Synpcc7942_2092	0.12	-2.7
2,173,594	+	ndhD3	Synpcc7942_2092	0.20	-1.0
2,173,597	+	ndhD3	Synpcc7942_2092	0.21	-1.9
2,173,677	+	ndhD3	Synpcc7942_2092	0.26	-2.7
2,173,691	-	ndhD3	Synpcc7942_2092	0.27	+3.7
2,173,701	-	ndhD3	Synpcc7942_2092	0.27	-2.2
2,173,832	+	ndhD3	Synpcc7942_2092	0.36	-2.3
2,173,832	+	ndhD3	Synpcc7942_2092	0.36	-0.2
2,173,840	-	ndhD3	Synpcc7942_2092	0.36	-2.9
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-2.9
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-3.2
2,173,873	+	ndhD3	Synpcc7942_2092	0.38	-2.0
2,173,881	-	ndhD3	Synpcc7942_2092	0.39	-2.8
2,173,943	+	ndhD3	Synpcc7942_2092	0.43	-3.9
2,173,951	-	ndhD3	Synpcc7942_2092	0.44	-3.0
2,173,975	-	ndhD3	Synpcc7942_2092	0.45	-0.6
2,174,007	-	ndhD3	Synpcc7942_2092	0.47	-2.8
2,174,007	-	ndhD3	Synpcc7942_2092	0.47	-2.8
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-1.0
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-0.8
2,174,031	+	ndhD3	Synpcc7942_2092	0.49	-2.1
2,174,039	-	ndhD3	Synpcc7942_2092	0.49	-2.1
2,174,039	-	ndhD3	Synpcc7942_2092	0.49	-1.0
2,174,053	-	ndhD3	Synpcc7942_2092	0.50	-2.3
2,174,100	-	ndhD3	Synpcc7942_2092	0.53	+2.6
2,174,121	+	ndhD3	Synpcc7942_2092	0.55	-3.5
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	+0.3
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	-2.5
2,174,131	-	ndhD3	Synpcc7942_2092	0.55	-0.9
2,174,134	+	ndhD3	Synpcc7942_2092	0.55	-4.9
2,174,134	+	ndhD3	Synpcc7942_2092	0.55	-1.8
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-1.9
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-1.9
2,174,154	-	ndhD3	Synpcc7942_2092	0.57	-3.5
2,174,231	+	ndhD3	Synpcc7942_2092	0.62	-2.8
2,174,231	+	ndhD3	Synpcc7942_2092	0.62	-1.7
2,174,245	-	ndhD3	Synpcc7942_2092	0.63	-2.8
2,174,299	-	ndhD3	Synpcc7942_2092	0.66	-2.7
2,174,318	-	ndhD3	Synpcc7942_2092	0.67	-2.8
2,174,328	-	ndhD3	Synpcc7942_2092	0.68	-3.1
2,174,329	-	ndhD3	Synpcc7942_2092	0.68	+0.2
2,174,354	+	ndhD3	Synpcc7942_2092	0.70	-1.9
2,174,393	+	ndhD3	Synpcc7942_2092	0.72	-3.3
2,174,527	-	ndhD3	Synpcc7942_2092	0.81	-0.3
2,174,548	-	ndhD3	Synpcc7942_2092	0.82	-1.6
2,174,626	-	ndhD3	Synpcc7942_2092	0.87	+1.4
2,174,660	+	ndhD3	Synpcc7942_2092	0.89	-3.6
2,174,669	-				-1.4
2,174,669	-				-3.3
2,174,689	-				-1.6
2,174,713	+				-1.4
2,174,764	+				+5.3
2,174,795	-				-3.3
2,174,795	-				-2.7
2,174,826	-				+3.6
2,174,835	+				-1.5
2,174,872	+				-2.6
2,174,895	-				-2.5
2,174,904	+				-2.3
2,174,912	-				-2.8
2,174,919	+				-1.0
2,174,927	-				-2.2
2,174,946	-				-1.6
2,174,952	+				-2.6
2,174,960	-				-2.5
2,174,979	+				-3.4
2,175,007	+	chpY	Synpcc7942_2093	0.11	-1.5
2,175,007	+	chpY	Synpcc7942_2093	0.11	-3.4
2,175,007	+	chpY	Synpcc7942_2093	0.11	-5.5
2,175,007	+	chpY	Synpcc7942_2093	0.11	-4.1
2,175,007	+	chpY	Synpcc7942_2093	0.11	-1.2
2,175,007	+	chpY	Synpcc7942_2093	0.11	-3.1
2,175,007	+	chpY	Synpcc7942_2093	0.11	-3.3
2,175,015	-	chpY	Synpcc7942_2093	0.11	-3.3
2,175,132	-	chpY	Synpcc7942_2093	0.20	-3.2
2,175,196	+	chpY	Synpcc7942_2093	0.25	-1.6
2,175,204	-	chpY	Synpcc7942_2093	0.26	-2.2
2,175,235	+	chpY	Synpcc7942_2093	0.28	-2.1
2,175,253	+	chpY	Synpcc7942_2093	0.30	-4.1
2,175,253	-	chpY	Synpcc7942_2093	0.30	-3.2
2,175,319	+	chpY	Synpcc7942_2093	0.35	-2.2
2,175,320	+	chpY	Synpcc7942_2093	0.35	+2.2
2,175,351	+	chpY	Synpcc7942_2093	0.37	-1.4
2,175,359	-	chpY	Synpcc7942_2093	0.38	-1.8
2,175,386	+	chpY	Synpcc7942_2093	0.40	-2.9
2,175,422	+	chpY	Synpcc7942_2093	0.43	-2.6
2,175,427	+	chpY	Synpcc7942_2093	0.43	-2.3
2,175,435	-	chpY	Synpcc7942_2093	0.44	-2.1
2,175,464	-	chpY	Synpcc7942_2093	0.46	-1.2
2,175,469	-	chpY	Synpcc7942_2093	0.46	-2.3
2,175,478	-	chpY	Synpcc7942_2093	0.47	-2.3
2,175,496	+	chpY	Synpcc7942_2093	0.48	-1.7
2,175,504	-	chpY	Synpcc7942_2093	0.49	-2.3
2,175,631	-	chpY	Synpcc7942_2093	0.59	-1.0
2,175,635	+	chpY	Synpcc7942_2093	0.59	-2.3
2,175,681	+	chpY	Synpcc7942_2093	0.63	-1.2
2,175,681	+	chpY	Synpcc7942_2093	0.63	-2.9
2,175,709	+	chpY	Synpcc7942_2093	0.65	-2.0
2,175,712	-	chpY	Synpcc7942_2093	0.65	-1.7
2,175,714	+	chpY	Synpcc7942_2093	0.65	-2.9
2,175,717	-	chpY	Synpcc7942_2093	0.66	-3.5
2,175,733	-	chpY	Synpcc7942_2093	0.67	-2.9
2,175,740	+	chpY	Synpcc7942_2093	0.67	-1.3
2,175,740	+	chpY	Synpcc7942_2093	0.67	-2.3
2,175,740	+	chpY	Synpcc7942_2093	0.67	-3.7
2,175,743	-	chpY	Synpcc7942_2093	0.68	-1.5
2,175,748	-	chpY	Synpcc7942_2093	0.68	-0.8
2,175,763	-	chpY	Synpcc7942_2093	0.69	-1.2
2,175,768	-	chpY	Synpcc7942_2093	0.69	-4.9
2,175,768	-	chpY	Synpcc7942_2093	0.69	-2.0
2,175,811	+	chpY	Synpcc7942_2093	0.73	-1.5
2,175,811	-	chpY	Synpcc7942_2093	0.73	-2.7
2,175,820	+	chpY	Synpcc7942_2093	0.73	-4.0