Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folC and Synpcc7942_0945 are separated by 52 nucleotides Synpcc7942_0945 and aoxA are separated by 373 nucleotides
Synpcc7942_0944: folC - FolC bifunctional protein, at 951,502 to 952,740
folC
Synpcc7942_0945: Synpcc7942_0945 - hypothetical protein, at 952,793 to 953,767
_0945
Synpcc7942_0946: aoxA - UDP-galactopyranose mutase, at 954,141 to 955,628
aoxA
Position (kb) 952
953
954 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 952.790 kb on + strand at 952.841 kb on - strand at 952.855 kb on - strand at 953.031 kb on + strand, within Synpcc7942_0945 at 953.096 kb on + strand, within Synpcc7942_0945 at 953.191 kb on + strand, within Synpcc7942_0945 at 953.425 kb on + strand, within Synpcc7942_0945 at 953.443 kb on - strand, within Synpcc7942_0945 at 953.514 kb on + strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.613 kb on - strand, within Synpcc7942_0945 at 953.648 kb on - strand, within Synpcc7942_0945 at 953.650 kb on - strand, within Synpcc7942_0945 at 953.652 kb on + strand, within Synpcc7942_0945 at 953.675 kb on + strand at 953.675 kb on + strand at 953.679 kb on + strand at 953.710 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.712 kb on + strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.720 kb on - strand at 953.827 kb on + strand at 953.850 kb on + strand at 953.874 kb on + strand at 953.911 kb on + strand at 953.928 kb on - strand at 954.001 kb on - strand at 954.037 kb on - strand at 954.057 kb on - strand at 954.060 kb on - strand at 954.071 kb on + strand at 954.075 kb on - strand at 954.075 kb on - strand at 954.170 kb on + strand at 954.178 kb on - strand at 954.230 kb on + strand at 954.231 kb on + strand at 954.238 kb on - strand at 954.239 kb on - strand at 954.239 kb on - strand at 954.244 kb on - strand at 954.250 kb on - strand at 954.250 kb on - strand at 954.252 kb on + strand at 954.260 kb on - strand at 954.267 kb on + strand at 954.267 kb on + strand at 954.275 kb on - strand at 954.302 kb on - strand, within aoxA at 954.326 kb on - strand at 954.372 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.389 kb on + strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.397 kb on - strand, within aoxA at 954.407 kb on - strand, within aoxA at 954.431 kb on - strand, within aoxA at 954.446 kb on - strand, within aoxA at 954.447 kb on - strand, within aoxA at 954.468 kb on - strand, within aoxA at 954.480 kb on + strand, within aoxA at 954.482 kb on - strand, within aoxA at 954.492 kb on - strand, within aoxA at 954.546 kb on + strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.554 kb on - strand, within aoxA at 954.566 kb on + strand, within aoxA at 954.567 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.569 kb on - strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.595 kb on + strand, within aoxA at 954.606 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.608 kb on + strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.614 kb on - strand, within aoxA at 954.635 kb on + strand, within aoxA at 954.651 kb on + strand, within aoxA at 954.654 kb on - strand, within aoxA at 954.662 kb on + strand, within aoxA at 954.673 kb on + strand, within aoxA at 954.683 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.718 kb on - strand, within aoxA at 954.729 kb on + strand, within aoxA at 954.737 kb on + strand, within aoxA at 954.737 kb on - strand, within aoxA at 954.744 kb on - strand, within aoxA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 952,790 + +1.7 952,841 - -2.9 952,855 - -0.6 953,031 + Synpcc7942_0945 0.24 +0.9 953,096 + Synpcc7942_0945 0.31 +0.7 953,191 + Synpcc7942_0945 0.41 +0.9 953,425 + Synpcc7942_0945 0.65 -2.6 953,443 - Synpcc7942_0945 0.67 -0.9 953,514 + Synpcc7942_0945 0.74 +0.1 953,613 - Synpcc7942_0945 0.84 +0.1 953,613 - Synpcc7942_0945 0.84 -0.4 953,648 - Synpcc7942_0945 0.88 -0.7 953,650 - Synpcc7942_0945 0.88 -1.2 953,652 + Synpcc7942_0945 0.88 +0.5 953,675 + -0.5 953,675 + +2.6 953,679 + +0.4 953,710 + +0.5 953,712 + -1.5 953,712 + +0.9 953,712 + +0.3 953,712 + -0.3 953,720 - -0.6 953,720 - -0.2 953,720 - -0.9 953,827 + -2.1 953,850 + -1.9 953,874 + -1.1 953,911 + -0.9 953,928 - +0.1 954,001 - -0.8 954,037 - +0.3 954,057 - -0.2 954,060 - +1.1 954,071 + +0.3 954,075 - +0.5 954,075 - +0.1 954,170 + -2.7 954,178 - -1.1 954,230 + -2.2 954,231 + +0.9 954,238 - -1.1 954,239 - -2.2 954,239 - +1.1 954,244 - -1.1 954,250 - -1.0 954,250 - -2.1 954,252 + -2.0 954,260 - -1.7 954,267 + -4.2 954,267 + +0.1 954,275 - +1.0 954,302 - aoxA Synpcc7942_0946 0.11 -1.4 954,326 - -0.7 954,372 + aoxA Synpcc7942_0946 0.16 -2.1 954,389 + aoxA Synpcc7942_0946 0.17 +2.5 954,389 + aoxA Synpcc7942_0946 0.17 -0.9 954,389 + aoxA Synpcc7942_0946 0.17 -0.4 954,389 + aoxA Synpcc7942_0946 0.17 +0.1 954,389 + aoxA Synpcc7942_0946 0.17 +0.5 954,389 + aoxA Synpcc7942_0946 0.17 +1.1 954,397 - aoxA Synpcc7942_0946 0.17 +0.6 954,397 - aoxA Synpcc7942_0946 0.17 -0.9 954,407 - aoxA Synpcc7942_0946 0.18 -0.2 954,431 - aoxA Synpcc7942_0946 0.19 +1.2 954,446 - aoxA Synpcc7942_0946 0.20 -1.7 954,447 - aoxA Synpcc7942_0946 0.21 -1.5 954,468 - aoxA Synpcc7942_0946 0.22 -0.4 954,480 + aoxA Synpcc7942_0946 0.23 -1.0 954,482 - aoxA Synpcc7942_0946 0.23 -0.2 954,492 - aoxA Synpcc7942_0946 0.24 -0.6 954,546 + aoxA Synpcc7942_0946 0.27 -1.3 954,554 - aoxA Synpcc7942_0946 0.28 -0.4 954,554 - aoxA Synpcc7942_0946 0.28 -1.6 954,554 - aoxA Synpcc7942_0946 0.28 +1.3 954,554 - aoxA Synpcc7942_0946 0.28 -0.7 954,566 + aoxA Synpcc7942_0946 0.29 -0.9 954,567 - aoxA Synpcc7942_0946 0.29 +3.8 954,569 - aoxA Synpcc7942_0946 0.29 -0.9 954,569 - aoxA Synpcc7942_0946 0.29 -0.8 954,595 + aoxA Synpcc7942_0946 0.31 +0.3 954,595 + aoxA Synpcc7942_0946 0.31 -1.0 954,606 + aoxA Synpcc7942_0946 0.31 -1.0 954,608 + aoxA Synpcc7942_0946 0.31 +1.5 954,608 + aoxA Synpcc7942_0946 0.31 +1.6 954,614 - aoxA Synpcc7942_0946 0.32 -1.6 954,614 - aoxA Synpcc7942_0946 0.32 +0.9 954,635 + aoxA Synpcc7942_0946 0.33 +0.1 954,651 + aoxA Synpcc7942_0946 0.34 -1.8 954,654 - aoxA Synpcc7942_0946 0.34 -0.4 954,662 + aoxA Synpcc7942_0946 0.35 -0.2 954,673 + aoxA Synpcc7942_0946 0.36 -0.5 954,683 - aoxA Synpcc7942_0946 0.36 -0.7 954,718 - aoxA Synpcc7942_0946 0.39 +0.5 954,718 - aoxA Synpcc7942_0946 0.39 +0.4 954,729 + aoxA Synpcc7942_0946 0.40 -1.2 954,737 + aoxA Synpcc7942_0946 0.40 +1.2 954,737 - aoxA Synpcc7942_0946 0.40 -0.3 954,744 - aoxA Synpcc7942_0946 0.41 -1.1
Or see this region's nucleotide sequence