Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcd and Synpcc7942_0718 are separated by 26 nucleotides Synpcc7942_0718 and Synpcc7942_0719 overlap by 4 nucleotides Synpcc7942_0719 and Synpcc7942_0720 are separated by 219 nucleotides Synpcc7942_0720 and Synpcc7942_0721 are separated by 202 nucleotides
Synpcc7942_0717: dcd - dCTP deaminase, at 713,127 to 713,651
dcd
Synpcc7942_0718: Synpcc7942_0718 - hypothetical protein, at 713,678 to 714,331
_0718
Synpcc7942_0719: Synpcc7942_0719 - hypothetical protein, at 714,328 to 714,831
_0719
Synpcc7942_0720: Synpcc7942_0720 - hypothetical protein, at 715,051 to 715,389
_0720
Synpcc7942_0721: Synpcc7942_0721 - hypothetical protein, at 715,592 to 715,882
_0721
Position (kb) 714
715 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.349 kb on - strand, within dcd at 713.351 kb on + strand, within dcd at 713.376 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.413 kb on + strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.431 kb on - strand, within dcd at 713.437 kb on + strand, within dcd at 713.445 kb on - strand, within dcd at 713.447 kb on + strand, within dcd at 713.453 kb on - strand, within dcd at 713.456 kb on + strand, within dcd at 713.472 kb on - strand, within dcd at 713.473 kb on - strand, within dcd at 713.479 kb on + strand, within dcd at 713.489 kb on - strand, within dcd at 713.510 kb on + strand, within dcd at 713.510 kb on + strand, within dcd at 713.518 kb on - strand, within dcd at 713.518 kb on - strand, within dcd at 713.558 kb on + strand, within dcd at 713.563 kb on + strand, within dcd at 713.568 kb on + strand, within dcd at 713.572 kb on + strand, within dcd at 713.577 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.582 kb on + strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.590 kb on - strand, within dcd at 713.719 kb on - strand at 713.720 kb on + strand at 713.754 kb on + strand, within Synpcc7942_0718 at 713.754 kb on - strand, within Synpcc7942_0718 at 713.781 kb on + strand, within Synpcc7942_0718 at 713.803 kb on + strand, within Synpcc7942_0718 at 713.822 kb on + strand, within Synpcc7942_0718 at 713.840 kb on - strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.846 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.847 kb on + strand, within Synpcc7942_0718 at 713.850 kb on - strand, within Synpcc7942_0718 at 713.851 kb on + strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.854 kb on - strand, within Synpcc7942_0718 at 713.856 kb on + strand, within Synpcc7942_0718 at 713.886 kb on - strand, within Synpcc7942_0718 at 713.910 kb on - strand, within Synpcc7942_0718 at 713.931 kb on - strand, within Synpcc7942_0718 at 713.933 kb on - strand, within Synpcc7942_0718 at 713.943 kb on + strand, within Synpcc7942_0718 at 713.951 kb on - strand, within Synpcc7942_0718 at 713.952 kb on + strand, within Synpcc7942_0718 at 713.970 kb on + strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.978 kb on - strand, within Synpcc7942_0718 at 713.998 kb on - strand, within Synpcc7942_0718 at 714.013 kb on - strand, within Synpcc7942_0718 at 714.021 kb on - strand, within Synpcc7942_0718 at 714.042 kb on + strand at 714.058 kb on + strand, within Synpcc7942_0718 at 714.060 kb on - strand, within Synpcc7942_0718 at 714.070 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.075 kb on + strand, within Synpcc7942_0718 at 714.078 kb on - strand, within Synpcc7942_0718 at 714.080 kb on + strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.083 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.104 kb on - strand, within Synpcc7942_0718 at 714.137 kb on - strand, within Synpcc7942_0718 at 714.143 kb on - strand, within Synpcc7942_0718 at 714.144 kb on + strand, within Synpcc7942_0718 at 714.145 kb on - strand, within Synpcc7942_0718 at 714.163 kb on + strand, within Synpcc7942_0718 at 714.167 kb on + strand, within Synpcc7942_0718 at 714.180 kb on - strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.182 kb on + strand, within Synpcc7942_0718 at 714.205 kb on + strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.213 kb on - strand, within Synpcc7942_0718 at 714.221 kb on - strand, within Synpcc7942_0718 at 714.282 kb on - strand at 714.309 kb on + strand at 714.335 kb on - strand at 714.367 kb on - strand at 714.381 kb on - strand, within Synpcc7942_0719 at 714.391 kb on - strand, within Synpcc7942_0719 at 714.456 kb on + strand, within Synpcc7942_0719 at 714.469 kb on - strand, within Synpcc7942_0719 at 714.506 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.516 kb on - strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.519 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.529 kb on + strand, within Synpcc7942_0719 at 714.537 kb on - strand, within Synpcc7942_0719 at 714.539 kb on - strand at 714.581 kb on - strand, within Synpcc7942_0719 at 714.671 kb on + strand, within Synpcc7942_0719 at 714.718 kb on + strand, within Synpcc7942_0719 at 714.746 kb on + strand, within Synpcc7942_0719 at 714.762 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.763 kb on + strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.771 kb on - strand, within Synpcc7942_0719 at 714.773 kb on + strand, within Synpcc7942_0719 at 714.778 kb on + strand, within Synpcc7942_0719 at 714.781 kb on - strand at 714.781 kb on - strand at 714.781 kb on - strand at 714.783 kb on + strand at 714.790 kb on + strand at 714.793 kb on - strand at 714.798 kb on - strand at 714.803 kb on - strand at 714.831 kb on + strand at 714.831 kb on + strand at 714.839 kb on - strand at 714.839 kb on - strand at 714.841 kb on + strand at 714.844 kb on + strand at 714.849 kb on + strand at 714.880 kb on - strand at 714.880 kb on - strand at 714.882 kb on + strand at 714.889 kb on - strand at 714.904 kb on + strand at 714.910 kb on + strand at 714.912 kb on - strand at 714.912 kb on - strand at 714.915 kb on + strand at 714.918 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.923 kb on - strand at 714.925 kb on + strand at 714.930 kb on + strand at 714.933 kb on - strand at 714.938 kb on - strand at 714.948 kb on - strand at 714.977 kb on - strand at 714.979 kb on - strand at 714.995 kb on - strand at 715.006 kb on + strand at 715.007 kb on + strand at 715.018 kb on + strand at 715.040 kb on - strand at 715.056 kb on + strand at 715.064 kb on - strand at 715.064 kb on - strand at 715.068 kb on + strand at 715.125 kb on + strand, within Synpcc7942_0720 at 715.194 kb on + strand, within Synpcc7942_0720 at 715.196 kb on - strand at 715.202 kb on - strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.257 kb on + strand, within Synpcc7942_0720 at 715.274 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.284 kb on + strand, within Synpcc7942_0720 at 715.384 kb on + strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.392 kb on - strand at 715.401 kb on + strand at 715.401 kb on + strand at 715.431 kb on + strand at 715.442 kb on + strand at 715.442 kb on + strand at 715.449 kb on + strand at 715.449 kb on + strand at 715.457 kb on - strand at 715.464 kb on + strand at 715.464 kb on + strand at 715.467 kb on - strand at 715.470 kb on + strand at 715.472 kb on - strand at 715.495 kb on - strand at 715.544 kb on - strand at 715.571 kb on + strand at 715.598 kb on - strand at 715.603 kb on - strand at 715.607 kb on + strand at 715.607 kb on + strand at 715.615 kb on - strand at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.630 kb on - strand, within Synpcc7942_0721 at 715.635 kb on + strand, within Synpcc7942_0721 at 715.668 kb on + strand, within Synpcc7942_0721 at 715.679 kb on - strand, within Synpcc7942_0721 at 715.681 kb on - strand, within Synpcc7942_0721 at 715.686 kb on - strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.689 kb on + strand, within Synpcc7942_0721 at 715.723 kb on + strand, within Synpcc7942_0721 at 715.725 kb on - strand, within Synpcc7942_0721 at 715.801 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.806 kb on + strand, within Synpcc7942_0721 at 715.815 kb on + strand, within Synpcc7942_0721 at 715.829 kb on + strand, within Synpcc7942_0721
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 713,349 - dcd Synpcc7942_0717 0.42 +0.1 713,349 - dcd Synpcc7942_0717 0.42 +0.4 713,349 - dcd Synpcc7942_0717 0.42 -0.4 713,351 + dcd Synpcc7942_0717 0.43 +1.2 713,376 + dcd Synpcc7942_0717 0.47 +1.9 713,413 + dcd Synpcc7942_0717 0.54 +3.4 713,413 + dcd Synpcc7942_0717 0.54 -1.1 713,413 + dcd Synpcc7942_0717 0.54 -1.1 713,413 + dcd Synpcc7942_0717 0.54 +1.9 713,413 + dcd Synpcc7942_0717 0.54 +0.7 713,431 - dcd Synpcc7942_0717 0.58 +1.5 713,431 - dcd Synpcc7942_0717 0.58 +3.6 713,431 - dcd Synpcc7942_0717 0.58 +0.9 713,431 - dcd Synpcc7942_0717 0.58 -0.4 713,437 + dcd Synpcc7942_0717 0.59 -0.9 713,445 - dcd Synpcc7942_0717 0.61 +1.3 713,447 + dcd Synpcc7942_0717 0.61 -0.2 713,453 - dcd Synpcc7942_0717 0.62 -0.4 713,456 + dcd Synpcc7942_0717 0.63 -1.4 713,472 - dcd Synpcc7942_0717 0.66 -0.4 713,473 - dcd Synpcc7942_0717 0.66 +0.4 713,479 + dcd Synpcc7942_0717 0.67 +0.2 713,489 - dcd Synpcc7942_0717 0.69 -1.6 713,510 + dcd Synpcc7942_0717 0.73 +1.1 713,510 + dcd Synpcc7942_0717 0.73 +1.4 713,518 - dcd Synpcc7942_0717 0.74 -0.8 713,518 - dcd Synpcc7942_0717 0.74 -0.4 713,558 + dcd Synpcc7942_0717 0.82 +0.6 713,563 + dcd Synpcc7942_0717 0.83 -0.0 713,568 + dcd Synpcc7942_0717 0.84 -0.7 713,572 + dcd Synpcc7942_0717 0.85 -0.1 713,577 + dcd Synpcc7942_0717 0.86 -0.6 713,582 + dcd Synpcc7942_0717 0.87 +0.2 713,582 + dcd Synpcc7942_0717 0.87 -1.7 713,582 + dcd Synpcc7942_0717 0.87 -0.7 713,582 + dcd Synpcc7942_0717 0.87 +0.1 713,582 + dcd Synpcc7942_0717 0.87 +0.4 713,582 + dcd Synpcc7942_0717 0.87 -1.1 713,590 - dcd Synpcc7942_0717 0.88 -0.6 713,590 - dcd Synpcc7942_0717 0.88 +3.5 713,590 - dcd Synpcc7942_0717 0.88 -1.5 713,590 - dcd Synpcc7942_0717 0.88 -0.9 713,719 - -1.0 713,720 + -0.3 713,754 + Synpcc7942_0718 0.12 -2.1 713,754 - Synpcc7942_0718 0.12 +2.4 713,781 + Synpcc7942_0718 0.16 -0.0 713,803 + Synpcc7942_0718 0.19 -2.1 713,822 + Synpcc7942_0718 0.22 +1.2 713,840 - Synpcc7942_0718 0.25 +0.3 713,846 + Synpcc7942_0718 0.26 -0.2 713,846 + Synpcc7942_0718 0.26 +0.5 713,847 + Synpcc7942_0718 0.26 -0.5 713,847 + Synpcc7942_0718 0.26 +1.7 713,847 + Synpcc7942_0718 0.26 +0.5 713,850 - Synpcc7942_0718 0.26 +0.9 713,851 + Synpcc7942_0718 0.26 +0.5 713,854 - Synpcc7942_0718 0.27 -1.5 713,854 - Synpcc7942_0718 0.27 -1.1 713,856 + Synpcc7942_0718 0.27 +0.7 713,886 - Synpcc7942_0718 0.32 -0.5 713,910 - Synpcc7942_0718 0.35 -0.3 713,931 - Synpcc7942_0718 0.39 -1.0 713,933 - Synpcc7942_0718 0.39 -1.7 713,943 + Synpcc7942_0718 0.41 +0.9 713,951 - Synpcc7942_0718 0.42 -1.5 713,952 + Synpcc7942_0718 0.42 +0.4 713,970 + Synpcc7942_0718 0.45 -0.1 713,978 - Synpcc7942_0718 0.46 -1.6 713,978 - Synpcc7942_0718 0.46 -0.1 713,978 - Synpcc7942_0718 0.46 -0.8 713,998 - Synpcc7942_0718 0.49 -1.6 714,013 - Synpcc7942_0718 0.51 -0.3 714,021 - Synpcc7942_0718 0.52 -0.9 714,042 + +1.8 714,058 + Synpcc7942_0718 0.58 -0.2 714,060 - Synpcc7942_0718 0.58 -0.3 714,070 + Synpcc7942_0718 0.60 +0.9 714,075 + Synpcc7942_0718 0.61 +0.5 714,075 + Synpcc7942_0718 0.61 -0.9 714,078 - Synpcc7942_0718 0.61 +2.9 714,080 + Synpcc7942_0718 0.61 -0.3 714,083 - Synpcc7942_0718 0.62 -1.8 714,083 - Synpcc7942_0718 0.62 -1.6 714,104 - Synpcc7942_0718 0.65 -1.0 714,104 - Synpcc7942_0718 0.65 -1.3 714,137 - Synpcc7942_0718 0.70 +0.8 714,143 - Synpcc7942_0718 0.71 +0.6 714,144 + Synpcc7942_0718 0.71 +0.1 714,145 - Synpcc7942_0718 0.71 +0.1 714,163 + Synpcc7942_0718 0.74 -1.2 714,167 + Synpcc7942_0718 0.75 -0.1 714,180 - Synpcc7942_0718 0.77 +0.6 714,182 + Synpcc7942_0718 0.77 +0.2 714,182 + Synpcc7942_0718 0.77 -1.2 714,205 + Synpcc7942_0718 0.81 +3.2 714,213 - Synpcc7942_0718 0.82 -1.9 714,213 - Synpcc7942_0718 0.82 -0.5 714,213 - Synpcc7942_0718 0.82 +0.1 714,221 - Synpcc7942_0718 0.83 -1.2 714,282 - -0.4 714,309 + -0.7 714,335 - -0.5 714,367 - +0.3 714,381 - Synpcc7942_0719 0.11 +0.9 714,391 - Synpcc7942_0719 0.12 +0.0 714,456 + Synpcc7942_0719 0.25 -0.4 714,469 - Synpcc7942_0719 0.28 +0.3 714,506 - Synpcc7942_0719 0.35 -2.2 714,516 - Synpcc7942_0719 0.37 +2.6 714,516 - Synpcc7942_0719 0.37 +0.0 714,519 + Synpcc7942_0719 0.38 +0.3 714,519 + Synpcc7942_0719 0.38 -0.6 714,529 + Synpcc7942_0719 0.40 +0.5 714,529 + Synpcc7942_0719 0.40 +0.5 714,537 - Synpcc7942_0719 0.41 +0.0 714,539 - -1.4 714,581 - Synpcc7942_0719 0.50 -0.8 714,671 + Synpcc7942_0719 0.68 -1.5 714,718 + Synpcc7942_0719 0.77 +0.5 714,746 + Synpcc7942_0719 0.83 +2.2 714,762 + Synpcc7942_0719 0.86 -0.5 714,763 + Synpcc7942_0719 0.86 +0.6 714,763 + Synpcc7942_0719 0.86 -0.7 714,771 - Synpcc7942_0719 0.88 -2.4 714,771 - Synpcc7942_0719 0.88 +0.5 714,773 + Synpcc7942_0719 0.88 +0.3 714,778 + Synpcc7942_0719 0.89 -2.3 714,781 - -0.8 714,781 - -1.5 714,781 - -0.3 714,783 + +0.8 714,790 + -0.9 714,793 - +1.1 714,798 - +3.1 714,803 - -1.4 714,831 + +1.1 714,831 + -1.5 714,839 - -0.3 714,839 - -0.3 714,841 + +2.9 714,844 + -3.0 714,849 + +1.7 714,880 - +1.1 714,880 - -0.5 714,882 + -2.9 714,889 - -2.0 714,904 + -0.2 714,910 + +4.9 714,912 - +0.2 714,912 - -0.3 714,915 + -0.9 714,918 - -0.2 714,923 - -3.0 714,923 - +1.8 714,923 - +3.5 714,923 - -0.1 714,925 + +3.2 714,930 + +4.3 714,933 - -1.2 714,938 - +2.0 714,948 - +2.1 714,977 - +0.6 714,979 - +0.4 714,995 - -2.0 715,006 + +0.0 715,007 + -1.7 715,018 + -2.1 715,040 - -0.4 715,056 + -0.5 715,064 - -0.4 715,064 - -1.2 715,068 + -0.7 715,125 + Synpcc7942_0720 0.22 +0.2 715,194 + Synpcc7942_0720 0.42 +2.2 715,196 - +2.3 715,202 - Synpcc7942_0720 0.45 -2.7 715,257 + Synpcc7942_0720 0.61 +3.6 715,257 + Synpcc7942_0720 0.61 -0.3 715,274 + Synpcc7942_0720 0.66 +4.4 715,284 + Synpcc7942_0720 0.69 -0.4 715,284 + Synpcc7942_0720 0.69 +1.2 715,384 + -0.5 715,392 - +0.1 715,392 - +0.4 715,392 - -1.0 715,392 - -1.4 715,401 + -0.4 715,401 + +0.8 715,431 + -0.7 715,442 + +0.3 715,442 + -2.4 715,449 + -1.1 715,449 + -0.9 715,457 - -1.4 715,464 + -0.4 715,464 + +0.2 715,467 - -2.4 715,470 + +1.0 715,472 - -0.8 715,495 - -0.4 715,544 - -0.2 715,571 + -0.1 715,598 - -0.3 715,603 - -1.9 715,607 + -0.5 715,607 + -0.5 715,615 - -1.3 715,630 - Synpcc7942_0721 0.13 -3.2 715,630 - Synpcc7942_0721 0.13 +0.1 715,630 - Synpcc7942_0721 0.13 -2.2 715,635 + Synpcc7942_0721 0.15 -0.9 715,668 + Synpcc7942_0721 0.26 -1.4 715,679 - Synpcc7942_0721 0.30 -2.9 715,681 - Synpcc7942_0721 0.31 -0.9 715,686 - Synpcc7942_0721 0.32 -1.3 715,689 + Synpcc7942_0721 0.33 +0.1 715,689 + Synpcc7942_0721 0.33 -2.5 715,723 + Synpcc7942_0721 0.45 -3.4 715,725 - Synpcc7942_0721 0.46 -3.5 715,801 + Synpcc7942_0721 0.72 -1.1 715,806 + Synpcc7942_0721 0.74 -1.4 715,806 + Synpcc7942_0721 0.74 -0.9 715,815 + Synpcc7942_0721 0.77 -1.3 715,829 + Synpcc7942_0721 0.81 -2.5
Or see this region's nucleotide sequence