Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sdhA and prxQ are separated by 128 nucleotides prxQ and Synpcc7942_0643 are separated by 91 nucleotides Synpcc7942_0643 and cikA are separated by 109 nucleotides
Synpcc7942_0641: sdhA - succinate dehydrogenase flavoprotein subunit, at 634,089 to 635,996
sdhA
Synpcc7942_0642: prxQ - bacterioferritin comigratory protein, at 636,125 to 636,670
prxQ
Synpcc7942_0643: Synpcc7942_0643 - hypothetical protein, at 636,762 to 636,965
_0643
Synpcc7942_0644: cikA - GAF sensor hybrid histidine kinase, at 637,075 to 639,339
cikA
Position (kb) 636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 635.771 kb on - strand, within sdhA at 635.808 kb on + strand at 635.865 kb on + strand at 635.865 kb on + strand at 635.870 kb on + strand at 635.872 kb on + strand at 635.873 kb on - strand at 635.878 kb on - strand at 635.878 kb on - strand at 635.880 kb on - strand at 635.909 kb on + strand at 635.919 kb on + strand at 635.920 kb on - strand at 635.940 kb on - strand at 635.946 kb on - strand at 635.953 kb on + strand at 636.005 kb on + strand at 636.013 kb on + strand at 636.023 kb on + strand at 636.097 kb on - strand at 636.103 kb on - strand at 636.106 kb on - strand at 636.122 kb on + strand at 636.122 kb on + strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.130 kb on - strand at 636.132 kb on + strand at 636.140 kb on - strand at 636.168 kb on - strand at 636.168 kb on - strand at 636.191 kb on + strand, within prxQ at 636.197 kb on - strand, within prxQ at 636.228 kb on + strand, within prxQ at 636.264 kb on + strand, within prxQ at 636.266 kb on + strand, within prxQ at 636.274 kb on - strand, within prxQ at 636.288 kb on + strand, within prxQ at 636.288 kb on + strand, within prxQ at 636.296 kb on - strand, within prxQ at 636.302 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.309 kb on + strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.317 kb on - strand, within prxQ at 636.350 kb on + strand, within prxQ at 636.358 kb on + strand, within prxQ at 636.358 kb on + strand, within prxQ at 636.363 kb on + strand, within prxQ at 636.366 kb on - strand, within prxQ at 636.457 kb on - strand, within prxQ at 636.489 kb on + strand, within prxQ at 636.505 kb on + strand, within prxQ at 636.505 kb on + strand, within prxQ at 636.506 kb on + strand, within prxQ at 636.514 kb on - strand, within prxQ at 636.514 kb on - strand, within prxQ at 636.515 kb on + strand, within prxQ at 636.528 kb on + strand, within prxQ at 636.568 kb on - strand, within prxQ at 636.571 kb on + strand, within prxQ at 636.581 kb on + strand, within prxQ at 636.581 kb on + strand, within prxQ at 636.582 kb on + strand, within prxQ at 636.587 kb on + strand, within prxQ at 636.587 kb on + strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.589 kb on - strand, within prxQ at 636.646 kb on - strand at 636.652 kb on + strand at 636.673 kb on + strand at 636.673 kb on + strand at 636.691 kb on - strand at 636.691 kb on - strand at 636.692 kb on + strand at 636.709 kb on - strand at 636.710 kb on - strand at 636.717 kb on + strand at 636.722 kb on + strand at 636.722 kb on + strand at 636.722 kb on + strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.730 kb on - strand at 636.766 kb on - strand at 636.787 kb on - strand, within Synpcc7942_0643 at 636.792 kb on - strand, within Synpcc7942_0643 at 636.794 kb on + strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.802 kb on - strand, within Synpcc7942_0643 at 636.831 kb on + strand, within Synpcc7942_0643 at 636.857 kb on + strand, within Synpcc7942_0643 at 636.857 kb on + strand, within Synpcc7942_0643 at 636.867 kb on + strand, within Synpcc7942_0643 at 636.915 kb on + strand, within Synpcc7942_0643 at 636.921 kb on - strand, within Synpcc7942_0643 at 636.944 kb on + strand, within Synpcc7942_0643 at 636.944 kb on + strand, within Synpcc7942_0643 at 636.949 kb on + strand at 636.949 kb on + strand at 636.954 kb on + strand at 636.957 kb on - strand at 636.988 kb on + strand at 637.111 kb on - strand at 637.121 kb on + strand at 637.131 kb on - strand at 637.146 kb on - strand at 637.165 kb on + strand at 637.171 kb on + strand at 637.305 kb on - strand, within cikA at 637.305 kb on - strand at 637.306 kb on - strand at 637.308 kb on + strand at 637.325 kb on - strand, within cikA at 637.338 kb on - strand, within cikA at 637.338 kb on - strand, within cikA at 637.373 kb on + strand at 637.419 kb on - strand, within cikA at 637.420 kb on - strand, within cikA at 637.431 kb on + strand, within cikA at 637.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 635,771 - sdhA Synpcc7942_0641 0.88 +0.5 635,808 + +1.3 635,865 + +0.8 635,865 + +1.0 635,870 + -1.9 635,872 + +0.2 635,873 - -0.5 635,878 - -1.1 635,878 - -2.2 635,880 - +0.2 635,909 + +0.2 635,919 + +0.1 635,920 - -0.2 635,940 - +1.7 635,946 - +0.7 635,953 + +1.8 636,005 + -0.6 636,013 + -0.9 636,023 + -2.4 636,097 - +1.0 636,103 - +0.1 636,106 - +0.8 636,122 + -0.1 636,122 + -0.7 636,130 - -2.1 636,130 - +0.7 636,130 - -0.4 636,130 - -1.1 636,130 - -1.8 636,132 + -2.1 636,140 - -0.9 636,168 - +1.0 636,168 - +0.0 636,191 + prxQ Synpcc7942_0642 0.12 -0.5 636,197 - prxQ Synpcc7942_0642 0.13 +1.7 636,228 + prxQ Synpcc7942_0642 0.19 -0.5 636,264 + prxQ Synpcc7942_0642 0.25 +3.5 636,266 + prxQ Synpcc7942_0642 0.26 +0.7 636,274 - prxQ Synpcc7942_0642 0.27 +1.2 636,288 + prxQ Synpcc7942_0642 0.30 -2.4 636,288 + prxQ Synpcc7942_0642 0.30 +0.6 636,296 - prxQ Synpcc7942_0642 0.31 -1.4 636,302 + prxQ Synpcc7942_0642 0.32 +3.1 636,309 + prxQ Synpcc7942_0642 0.34 -1.0 636,309 + prxQ Synpcc7942_0642 0.34 -0.5 636,309 + prxQ Synpcc7942_0642 0.34 -2.9 636,309 + prxQ Synpcc7942_0642 0.34 +0.8 636,309 + prxQ Synpcc7942_0642 0.34 +4.4 636,309 + prxQ Synpcc7942_0642 0.34 -0.2 636,309 + prxQ Synpcc7942_0642 0.34 +0.9 636,309 + prxQ Synpcc7942_0642 0.34 +0.5 636,309 + prxQ Synpcc7942_0642 0.34 -2.1 636,317 - prxQ Synpcc7942_0642 0.35 -1.1 636,317 - prxQ Synpcc7942_0642 0.35 +0.8 636,317 - prxQ Synpcc7942_0642 0.35 +0.3 636,317 - prxQ Synpcc7942_0642 0.35 +1.8 636,317 - prxQ Synpcc7942_0642 0.35 -2.3 636,317 - prxQ Synpcc7942_0642 0.35 -1.8 636,350 + prxQ Synpcc7942_0642 0.41 +0.8 636,358 + prxQ Synpcc7942_0642 0.43 +1.5 636,358 + prxQ Synpcc7942_0642 0.43 -0.9 636,363 + prxQ Synpcc7942_0642 0.44 +0.1 636,366 - prxQ Synpcc7942_0642 0.44 -0.7 636,457 - prxQ Synpcc7942_0642 0.61 -2.0 636,489 + prxQ Synpcc7942_0642 0.67 -0.6 636,505 + prxQ Synpcc7942_0642 0.70 +1.4 636,505 + prxQ Synpcc7942_0642 0.70 -0.1 636,506 + prxQ Synpcc7942_0642 0.70 -0.3 636,514 - prxQ Synpcc7942_0642 0.71 +4.5 636,514 - prxQ Synpcc7942_0642 0.71 +1.0 636,515 + prxQ Synpcc7942_0642 0.71 +0.8 636,528 + prxQ Synpcc7942_0642 0.74 -1.1 636,568 - prxQ Synpcc7942_0642 0.81 +2.3 636,571 + prxQ Synpcc7942_0642 0.82 +2.6 636,581 + prxQ Synpcc7942_0642 0.84 -1.5 636,581 + prxQ Synpcc7942_0642 0.84 -1.1 636,582 + prxQ Synpcc7942_0642 0.84 +5.2 636,587 + prxQ Synpcc7942_0642 0.85 +0.3 636,587 + prxQ Synpcc7942_0642 0.85 +0.1 636,589 - prxQ Synpcc7942_0642 0.85 -2.4 636,589 - prxQ Synpcc7942_0642 0.85 +0.0 636,589 - prxQ Synpcc7942_0642 0.85 -0.5 636,589 - prxQ Synpcc7942_0642 0.85 -1.8 636,646 - +0.5 636,652 + +0.3 636,673 + -1.1 636,673 + -0.0 636,691 - -1.2 636,691 - -1.2 636,692 + +0.1 636,709 - +0.1 636,710 - +0.6 636,717 + +1.7 636,722 + -1.4 636,722 + -1.1 636,722 + +1.8 636,730 - -0.8 636,730 - +0.3 636,730 - -2.2 636,730 - -1.3 636,766 - -1.1 636,787 - Synpcc7942_0643 0.12 -2.3 636,792 - Synpcc7942_0643 0.15 -2.1 636,794 + Synpcc7942_0643 0.16 -3.5 636,802 - Synpcc7942_0643 0.20 -0.4 636,802 - Synpcc7942_0643 0.20 -2.5 636,802 - Synpcc7942_0643 0.20 -1.5 636,831 + Synpcc7942_0643 0.34 +1.0 636,857 + Synpcc7942_0643 0.47 -0.3 636,857 + Synpcc7942_0643 0.47 +0.0 636,867 + Synpcc7942_0643 0.51 -2.0 636,915 + Synpcc7942_0643 0.75 -1.0 636,921 - Synpcc7942_0643 0.78 +1.0 636,944 + Synpcc7942_0643 0.89 +1.3 636,944 + Synpcc7942_0643 0.89 -1.2 636,949 + +1.0 636,949 + +2.4 636,954 + +3.3 636,957 - -0.7 636,988 + -2.4 637,111 - -2.2 637,121 + -0.2 637,131 - +0.7 637,146 - -0.4 637,165 + -0.8 637,171 + -1.5 637,305 - cikA Synpcc7942_0644 0.10 -0.9 637,305 - -0.4 637,306 - -2.9 637,308 + -2.0 637,325 - cikA Synpcc7942_0644 0.11 -0.5 637,338 - cikA Synpcc7942_0644 0.12 -0.7 637,338 - cikA Synpcc7942_0644 0.12 -0.5 637,373 + -1.5 637,419 - cikA Synpcc7942_0644 0.15 -0.1 637,420 - cikA Synpcc7942_0644 0.15 +0.6 637,431 + cikA Synpcc7942_0644 0.16 -0.3 637,619 + -1.5
Or see this region's nucleotide sequence