Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0521

Experiment: Flask grown to static phase (untill yellowing)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0519 and Synpcc7942_0520 are separated by 49 nucleotidesSynpcc7942_0520 and Synpcc7942_0521 are separated by 5 nucleotidesSynpcc7942_0521 and Synpcc7942_0522 are separated by 518 nucleotidesSynpcc7942_0522 and Synpcc7942_0523 are separated by 1 nucleotides Synpcc7942_0519: Synpcc7942_0519 - hypothetical protein, at 505,620 to 506,138 _0519 Synpcc7942_0520: Synpcc7942_0520 - hypothetical protein, at 506,188 to 506,829 _0520 Synpcc7942_0521: Synpcc7942_0521 - hypothetical protein, at 506,835 to 507,422 _0521 Synpcc7942_0522: Synpcc7942_0522 - hypothetical protein, at 507,941 to 508,312 _0522 Synpcc7942_0523: Synpcc7942_0523 - hypothetical protein, at 508,314 to 508,703 _0523 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 505.841 kb on - strand, within Synpcc7942_0519at 505.864 kb on + strand, within Synpcc7942_0519at 505.883 kb on + strand, within Synpcc7942_0519at 505.887 kb on - strand, within Synpcc7942_0519at 505.889 kb on + strand, within Synpcc7942_0519at 505.916 kb on + strand, within Synpcc7942_0519at 505.989 kb on + strand, within Synpcc7942_0519at 505.997 kb on - strand, within Synpcc7942_0519at 506.004 kb on - strand, within Synpcc7942_0519at 506.015 kb on + strand, within Synpcc7942_0519at 506.043 kb on + strand, within Synpcc7942_0519at 506.099 kb on - strandat 506.099 kb on - strandat 506.099 kb on - strandat 506.111 kb on - strandat 506.111 kb on - strandat 506.139 kb on + strandat 506.185 kb on + strandat 506.194 kb on + strandat 506.271 kb on + strand, within Synpcc7942_0520at 506.290 kb on - strand, within Synpcc7942_0520at 506.290 kb on - strand, within Synpcc7942_0520at 506.291 kb on - strand, within Synpcc7942_0520at 506.370 kb on - strand, within Synpcc7942_0520at 506.372 kb on + strand, within Synpcc7942_0520at 506.372 kb on + strand, within Synpcc7942_0520at 506.373 kb on + strand, within Synpcc7942_0520at 506.375 kb on + strand, within Synpcc7942_0520at 506.380 kb on + strand, within Synpcc7942_0520at 506.380 kb on - strand, within Synpcc7942_0520at 506.452 kb on + strand, within Synpcc7942_0520at 506.470 kb on + strand, within Synpcc7942_0520at 506.470 kb on + strand, within Synpcc7942_0520at 506.475 kb on + strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.478 kb on - strand, within Synpcc7942_0520at 506.479 kb on - strand, within Synpcc7942_0520at 506.554 kb on + strand, within Synpcc7942_0520at 506.564 kb on + strand, within Synpcc7942_0520at 506.565 kb on - strand, within Synpcc7942_0520at 506.602 kb on + strand, within Synpcc7942_0520at 506.603 kb on + strand, within Synpcc7942_0520at 506.631 kb on + strand, within Synpcc7942_0520at 506.636 kb on + strand, within Synpcc7942_0520at 506.639 kb on - strand, within Synpcc7942_0520at 506.671 kb on + strand, within Synpcc7942_0520at 506.684 kb on - strand, within Synpcc7942_0520at 506.686 kb on + strand, within Synpcc7942_0520at 506.686 kb on + strand, within Synpcc7942_0520at 506.694 kb on - strand, within Synpcc7942_0520at 506.694 kb on - strand, within Synpcc7942_0520at 506.721 kb on + strand, within Synpcc7942_0520at 506.721 kb on + strand, within Synpcc7942_0520at 506.745 kb on + strand, within Synpcc7942_0520at 506.767 kb on + strandat 506.774 kb on - strandat 506.774 kb on - strandat 506.784 kb on - strandat 506.790 kb on + strandat 506.832 kb on + strandat 506.842 kb on + strandat 506.842 kb on - strandat 506.850 kb on - strandat 506.887 kb on - strandat 506.887 kb on - strandat 506.905 kb on + strand, within Synpcc7942_0521at 506.913 kb on - strand, within Synpcc7942_0521at 506.916 kb on + strand, within Synpcc7942_0521at 506.917 kb on + strand, within Synpcc7942_0521at 506.937 kb on + strand, within Synpcc7942_0521at 506.942 kb on + strand, within Synpcc7942_0521at 506.945 kb on - strand, within Synpcc7942_0521at 506.957 kb on + strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.965 kb on - strand, within Synpcc7942_0521at 506.967 kb on + strand, within Synpcc7942_0521at 506.972 kb on + strand, within Synpcc7942_0521at 506.977 kb on + strand, within Synpcc7942_0521at 506.982 kb on + strand, within Synpcc7942_0521at 506.985 kb on - strand, within Synpcc7942_0521at 506.990 kb on - strand, within Synpcc7942_0521at 507.007 kb on + strand, within Synpcc7942_0521at 507.012 kb on + strand, within Synpcc7942_0521at 507.020 kb on - strand, within Synpcc7942_0521at 507.022 kb on + strand, within Synpcc7942_0521at 507.043 kb on - strand, within Synpcc7942_0521at 507.057 kb on + strand, within Synpcc7942_0521at 507.067 kb on - strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.077 kb on + strand, within Synpcc7942_0521at 507.095 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.135 kb on - strand, within Synpcc7942_0521at 507.162 kb on + strand, within Synpcc7942_0521at 507.207 kb on + strand, within Synpcc7942_0521at 507.232 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.239 kb on + strand, within Synpcc7942_0521at 507.252 kb on + strand, within Synpcc7942_0521at 507.270 kb on - strand, within Synpcc7942_0521at 507.287 kb on - strand, within Synpcc7942_0521at 507.327 kb on - strand, within Synpcc7942_0521at 507.330 kb on - strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.344 kb on + strand, within Synpcc7942_0521at 507.353 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.354 kb on + strand, within Synpcc7942_0521at 507.371 kb on + strandat 507.379 kb on - strandat 507.386 kb on - strandat 507.386 kb on - strandat 507.393 kb on + strandat 507.549 kb on - strandat 507.559 kb on - strandat 507.618 kb on + strandat 507.719 kb on + strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.727 kb on - strandat 507.745 kb on + strandat 507.755 kb on + strandat 507.755 kb on + strandat 507.763 kb on - strandat 507.836 kb on + strandat 507.989 kb on + strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 507.997 kb on - strand, within Synpcc7942_0522at 508.018 kb on + strand, within Synpcc7942_0522at 508.032 kb on + strand, within Synpcc7942_0522at 508.032 kb on + strand, within Synpcc7942_0522at 508.042 kb on + strand, within Synpcc7942_0522at 508.072 kb on + strand, within Synpcc7942_0522at 508.078 kb on - strand, within Synpcc7942_0522at 508.089 kb on + strand, within Synpcc7942_0522at 508.098 kb on + strand, within Synpcc7942_0522at 508.098 kb on - strand, within Synpcc7942_0522at 508.108 kb on + strand, within Synpcc7942_0522at 508.116 kb on + strand, within Synpcc7942_0522at 508.116 kb on + strand, within Synpcc7942_0522at 508.116 kb on - strand, within Synpcc7942_0522at 508.124 kb on - strand, within Synpcc7942_0522at 508.124 kb on - strand, within Synpcc7942_0522at 508.149 kb on - strand, within Synpcc7942_0522at 508.216 kb on - strand, within Synpcc7942_0522at 508.248 kb on - strand, within Synpcc7942_0522at 508.253 kb on + strand, within Synpcc7942_0522at 508.346 kb on + strandat 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.386 kb on + strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strand, within Synpcc7942_0523at 508.394 kb on - strandat 508.399 kb on + strand, within Synpcc7942_0523at 508.411 kb on - strand, within Synpcc7942_0523at 508.418 kb on - strand, within Synpcc7942_0523

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing)
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505,841 - Synpcc7942_0519 0.43 +1.0
505,864 + Synpcc7942_0519 0.47 +0.6
505,883 + Synpcc7942_0519 0.51 +4.1
505,887 - Synpcc7942_0519 0.51 +0.1
505,889 + Synpcc7942_0519 0.52 +0.8
505,916 + Synpcc7942_0519 0.57 -0.6
505,989 + Synpcc7942_0519 0.71 -0.9
505,997 - Synpcc7942_0519 0.73 +1.7
506,004 - Synpcc7942_0519 0.74 +1.3
506,015 + Synpcc7942_0519 0.76 +3.8
506,043 + Synpcc7942_0519 0.82 +3.4
506,099 - -0.9
506,099 - +1.5
506,099 - +0.6
506,111 - -0.5
506,111 - +0.9
506,139 + +1.4
506,185 + +4.0
506,194 + +4.9
506,271 + Synpcc7942_0520 0.13 +1.0
506,290 - Synpcc7942_0520 0.16 +3.6
506,290 - Synpcc7942_0520 0.16 +6.1
506,291 - Synpcc7942_0520 0.16 +4.5
506,370 - Synpcc7942_0520 0.28 +1.8
506,372 + Synpcc7942_0520 0.29 +3.8
506,372 + Synpcc7942_0520 0.29 +4.0
506,373 + Synpcc7942_0520 0.29 +3.9
506,375 + Synpcc7942_0520 0.29 +4.3
506,380 + Synpcc7942_0520 0.30 +1.2
506,380 - Synpcc7942_0520 0.30 +1.0
506,452 + Synpcc7942_0520 0.41 +4.0
506,470 + Synpcc7942_0520 0.44 +4.4
506,470 + Synpcc7942_0520 0.44 +0.9
506,475 + Synpcc7942_0520 0.45 +4.4
506,478 - Synpcc7942_0520 0.45 +4.1
506,478 - Synpcc7942_0520 0.45 -1.5
506,478 - Synpcc7942_0520 0.45 +5.9
506,479 - Synpcc7942_0520 0.45 +4.4
506,554 + Synpcc7942_0520 0.57 +4.8
506,564 + Synpcc7942_0520 0.59 +3.2
506,565 - Synpcc7942_0520 0.59 +5.4
506,602 + Synpcc7942_0520 0.64 +4.5
506,603 + Synpcc7942_0520 0.65 +4.8
506,631 + Synpcc7942_0520 0.69 +5.9
506,636 + Synpcc7942_0520 0.70 +1.6
506,639 - Synpcc7942_0520 0.70 +2.6
506,671 + Synpcc7942_0520 0.75 +4.6
506,684 - Synpcc7942_0520 0.77 +4.1
506,686 + Synpcc7942_0520 0.78 +3.3
506,686 + Synpcc7942_0520 0.78 +5.1
506,694 - Synpcc7942_0520 0.79 +5.0
506,694 - Synpcc7942_0520 0.79 +1.5
506,721 + Synpcc7942_0520 0.83 +2.9
506,721 + Synpcc7942_0520 0.83 +3.7
506,745 + Synpcc7942_0520 0.87 +4.2
506,767 + +1.9
506,774 - +2.7
506,774 - +4.1
506,784 - +0.8
506,790 + +4.8
506,832 + +0.9
506,842 + +4.3
506,842 - -0.4
506,850 - +1.8
506,887 - +0.0
506,887 - +0.5
506,905 + Synpcc7942_0521 0.12 +1.1
506,913 - Synpcc7942_0521 0.13 +2.7
506,916 + Synpcc7942_0521 0.14 -0.1
506,917 + Synpcc7942_0521 0.14 +2.6
506,937 + Synpcc7942_0521 0.17 +0.7
506,942 + Synpcc7942_0521 0.18 +4.2
506,945 - Synpcc7942_0521 0.19 +1.4
506,957 + Synpcc7942_0521 0.21 -0.8
506,965 - Synpcc7942_0521 0.22 +0.6
506,965 - Synpcc7942_0521 0.22 +1.0
506,967 + Synpcc7942_0521 0.22 +2.3
506,972 + Synpcc7942_0521 0.23 +0.2
506,977 + Synpcc7942_0521 0.24 +4.0
506,982 + Synpcc7942_0521 0.25 +3.0
506,985 - Synpcc7942_0521 0.26 +0.5
506,990 - Synpcc7942_0521 0.26 +2.2
507,007 + Synpcc7942_0521 0.29 +0.2
507,012 + Synpcc7942_0521 0.30 +1.7
507,020 - Synpcc7942_0521 0.31 +0.8
507,022 + Synpcc7942_0521 0.32 +1.9
507,043 - Synpcc7942_0521 0.35 +1.0
507,057 + Synpcc7942_0521 0.38 +1.8
507,067 - Synpcc7942_0521 0.39 -0.6
507,077 + Synpcc7942_0521 0.41 +2.0
507,077 + Synpcc7942_0521 0.41 +0.8
507,095 - Synpcc7942_0521 0.44 +1.2
507,135 - Synpcc7942_0521 0.51 -0.0
507,135 - Synpcc7942_0521 0.51 +3.5
507,162 + Synpcc7942_0521 0.56 +0.5
507,207 + Synpcc7942_0521 0.63 -0.6
507,232 + Synpcc7942_0521 0.68 +0.2
507,239 + Synpcc7942_0521 0.69 +1.1
507,239 + Synpcc7942_0521 0.69 +1.5
507,252 + Synpcc7942_0521 0.71 +0.3
507,270 - Synpcc7942_0521 0.74 -0.6
507,287 - Synpcc7942_0521 0.77 +1.0
507,327 - Synpcc7942_0521 0.84 +2.2
507,330 - Synpcc7942_0521 0.84 +3.4
507,344 + Synpcc7942_0521 0.87 -1.4
507,344 + Synpcc7942_0521 0.87 +0.2
507,353 + Synpcc7942_0521 0.88 +2.6
507,354 + Synpcc7942_0521 0.88 +0.7
507,354 + Synpcc7942_0521 0.88 +1.3
507,371 + -1.3
507,379 - -1.6
507,386 - +3.1
507,386 - +0.2
507,393 + +0.0
507,549 - -0.4
507,559 - -1.0
507,618 + -0.6
507,719 + +0.8
507,727 - -1.1
507,727 - -1.4
507,727 - -1.6
507,727 - -0.7
507,745 + -0.3
507,755 + -0.0
507,755 + -2.0
507,763 - -0.3
507,836 + -0.5
507,989 + Synpcc7942_0522 0.13 +0.2
507,997 - Synpcc7942_0522 0.15 -0.2
507,997 - Synpcc7942_0522 0.15 -1.5
507,997 - Synpcc7942_0522 0.15 -1.0
508,018 + Synpcc7942_0522 0.21 +0.8
508,032 + Synpcc7942_0522 0.24 +0.2
508,032 + Synpcc7942_0522 0.24 +1.9
508,042 + Synpcc7942_0522 0.27 +0.0
508,072 + Synpcc7942_0522 0.35 +0.9
508,078 - Synpcc7942_0522 0.37 +2.3
508,089 + Synpcc7942_0522 0.40 -0.5
508,098 + Synpcc7942_0522 0.42 +1.7
508,098 - Synpcc7942_0522 0.42 +3.3
508,108 + Synpcc7942_0522 0.45 -0.8
508,116 + Synpcc7942_0522 0.47 +1.3
508,116 + Synpcc7942_0522 0.47 -0.7
508,116 - Synpcc7942_0522 0.47 +1.6
508,124 - Synpcc7942_0522 0.49 -0.8
508,124 - Synpcc7942_0522 0.49 -0.0
508,149 - Synpcc7942_0522 0.56 -1.6
508,216 - Synpcc7942_0522 0.74 -0.3
508,248 - Synpcc7942_0522 0.83 -0.8
508,253 + Synpcc7942_0522 0.84 +0.7
508,346 + +3.1
508,386 + Synpcc7942_0523 0.18 -1.0
508,386 + Synpcc7942_0523 0.18 +3.7
508,386 + Synpcc7942_0523 0.18 +1.5
508,386 + Synpcc7942_0523 0.18 -0.3
508,394 - Synpcc7942_0523 0.21 -0.9
508,394 - Synpcc7942_0523 0.21 -0.9
508,394 - Synpcc7942_0523 0.21 -1.1
508,394 - Synpcc7942_0523 0.21 +1.2
508,394 - Synpcc7942_0523 0.21 -1.4
508,394 - Synpcc7942_0523 0.21 -2.2
508,394 - +0.3
508,399 + Synpcc7942_0523 0.22 -0.5
508,411 - Synpcc7942_0523 0.25 +2.0
508,418 - Synpcc7942_0523 0.27 -1.7

Or see this region's nucleotide sequence