Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0490 and Synpcc7942_0491 are separated by 259 nucleotides Synpcc7942_0491 and ribF are separated by 39 nucleotides ribF and Synpcc7942_0493 are separated by 142 nucleotides
Synpcc7942_0490: Synpcc7942_0490 - diguanylate cyclase with PAS/PAC sensor, at 477,395 to 479,440
_0490
Synpcc7942_0491: Synpcc7942_0491 - hypothetical protein, at 479,700 to 479,837
_0491
Synpcc7942_0492: ribF - bifunctional riboflavin kinase/FMN adenylyltransferase, at 479,877 to 480,824
ribF
Synpcc7942_0493: Synpcc7942_0493 - hypothetical protein, at 480,967 to 482,451
_0493
Position (kb) 479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 479.032 kb on - strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.116 kb on + strand, within Synpcc7942_0490 at 479.123 kb on - strand, within Synpcc7942_0490 at 479.125 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.185 kb on + strand, within Synpcc7942_0490 at 479.193 kb on - strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.220 kb on + strand, within Synpcc7942_0490 at 479.271 kb on + strand at 479.312 kb on - strand at 479.346 kb on - strand at 479.392 kb on + strand at 479.473 kb on + strand at 479.473 kb on + strand at 479.620 kb on - strand at 479.655 kb on - strand at 479.658 kb on + strand at 479.666 kb on - strand at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.737 kb on - strand, within Synpcc7942_0491 at 479.762 kb on + strand, within Synpcc7942_0491 at 479.770 kb on - strand, within Synpcc7942_0491 at 479.781 kb on - strand, within Synpcc7942_0491 at 479.788 kb on + strand, within Synpcc7942_0491 at 479.804 kb on + strand, within Synpcc7942_0491 at 479.811 kb on + strand, within Synpcc7942_0491 at 479.820 kb on - strand, within Synpcc7942_0491 at 479.832 kb on - strand at 479.849 kb on - strand at 479.899 kb on + strand at 480.839 kb on - strand at 480.848 kb on + strand at 480.853 kb on + strand at 480.853 kb on + strand at 480.861 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.862 kb on - strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.887 kb on + strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.895 kb on - strand at 480.910 kb on - strand at 480.913 kb on + strand at 480.936 kb on + strand at 480.977 kb on + strand at 480.977 kb on + strand at 481.096 kb on - strand at 481.099 kb on + strand at 481.135 kb on + strand, within Synpcc7942_0493 at 481.143 kb on - strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.169 kb on + strand, within Synpcc7942_0493 at 481.251 kb on + strand, within Synpcc7942_0493 at 481.265 kb on - strand, within Synpcc7942_0493 at 481.289 kb on - strand, within Synpcc7942_0493 at 481.333 kb on + strand, within Synpcc7942_0493 at 481.357 kb on - strand, within Synpcc7942_0493 at 481.359 kb on + strand, within Synpcc7942_0493 at 481.367 kb on - strand, within Synpcc7942_0493 at 481.394 kb on + strand, within Synpcc7942_0493 at 481.419 kb on - strand, within Synpcc7942_0493 at 481.428 kb on - strand, within Synpcc7942_0493 at 481.438 kb on - strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.473 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.521 kb on + strand, within Synpcc7942_0493 at 481.533 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.597 kb on - strand, within Synpcc7942_0493 at 481.674 kb on + strand, within Synpcc7942_0493 at 481.682 kb on - strand, within Synpcc7942_0493 at 481.689 kb on + strand, within Synpcc7942_0493 at 481.697 kb on - strand, within Synpcc7942_0493 at 481.702 kb on - strand, within Synpcc7942_0493 at 481.708 kb on - strand, within Synpcc7942_0493 at 481.709 kb on - strand, within Synpcc7942_0493 at 481.783 kb on - strand, within Synpcc7942_0493
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 479,032 - Synpcc7942_0490 0.80 +0.2 479,116 + Synpcc7942_0490 0.84 -1.1 479,116 + Synpcc7942_0490 0.84 -1.5 479,123 - Synpcc7942_0490 0.84 -0.5 479,125 + Synpcc7942_0490 0.85 -3.3 479,185 + Synpcc7942_0490 0.87 -0.7 479,185 + Synpcc7942_0490 0.87 -3.3 479,185 + Synpcc7942_0490 0.87 -0.2 479,193 - Synpcc7942_0490 0.88 +0.1 479,220 + Synpcc7942_0490 0.89 -0.9 479,220 + Synpcc7942_0490 0.89 -1.3 479,271 + +0.3 479,312 - -1.3 479,346 - -0.1 479,392 + -0.1 479,473 + +0.0 479,473 + -1.8 479,620 - +0.8 479,655 - +0.5 479,658 + -1.5 479,666 - -0.5 479,737 - Synpcc7942_0491 0.27 +1.3 479,737 - Synpcc7942_0491 0.27 +1.6 479,737 - Synpcc7942_0491 0.27 -0.4 479,737 - Synpcc7942_0491 0.27 -0.0 479,762 + Synpcc7942_0491 0.45 -2.1 479,770 - Synpcc7942_0491 0.51 +0.9 479,781 - Synpcc7942_0491 0.59 -2.4 479,788 + Synpcc7942_0491 0.64 +0.4 479,804 + Synpcc7942_0491 0.75 +3.0 479,811 + Synpcc7942_0491 0.80 -0.3 479,820 - Synpcc7942_0491 0.87 +0.8 479,832 - -0.5 479,849 - +0.3 479,899 + +1.0 480,839 - +0.6 480,848 + -2.0 480,853 + -1.5 480,853 + -3.6 480,861 - -0.8 480,862 - +1.2 480,862 - +0.5 480,862 - +0.0 480,887 + +0.2 480,887 + +1.7 480,887 + +0.8 480,895 - -0.4 480,895 - +3.8 480,895 - +0.6 480,895 - -0.5 480,895 - -1.5 480,910 - +2.1 480,913 + -0.5 480,936 + -0.4 480,977 + -0.9 480,977 + -0.6 481,096 - +2.9 481,099 + -1.4 481,135 + Synpcc7942_0493 0.11 -0.4 481,143 - Synpcc7942_0493 0.12 +0.3 481,169 + Synpcc7942_0493 0.14 -1.3 481,169 + Synpcc7942_0493 0.14 -0.7 481,251 + Synpcc7942_0493 0.19 -0.4 481,265 - Synpcc7942_0493 0.20 -0.1 481,289 - Synpcc7942_0493 0.22 +3.9 481,333 + Synpcc7942_0493 0.25 -0.3 481,357 - Synpcc7942_0493 0.26 -0.6 481,359 + Synpcc7942_0493 0.26 -1.3 481,367 - Synpcc7942_0493 0.27 -1.4 481,394 + Synpcc7942_0493 0.29 -0.3 481,419 - Synpcc7942_0493 0.30 +0.9 481,428 - Synpcc7942_0493 0.31 -0.8 481,438 - Synpcc7942_0493 0.32 -1.9 481,473 + Synpcc7942_0493 0.34 +0.5 481,473 + Synpcc7942_0493 0.34 +0.3 481,521 + Synpcc7942_0493 0.37 -1.7 481,521 + Synpcc7942_0493 0.37 -0.7 481,521 + Synpcc7942_0493 0.37 -0.3 481,521 + Synpcc7942_0493 0.37 -1.4 481,533 - Synpcc7942_0493 0.38 +0.8 481,597 - Synpcc7942_0493 0.42 -0.3 481,597 - Synpcc7942_0493 0.42 -1.8 481,674 + Synpcc7942_0493 0.48 +2.7 481,682 - Synpcc7942_0493 0.48 +1.6 481,689 + Synpcc7942_0493 0.49 -1.4 481,697 - Synpcc7942_0493 0.49 +0.7 481,702 - Synpcc7942_0493 0.49 +3.0 481,708 - Synpcc7942_0493 0.50 -0.3 481,709 - Synpcc7942_0493 0.50 +0.3 481,783 - Synpcc7942_0493 0.55 +1.2
Or see this region's nucleotide sequence