Experiment: Flask grown to static phase (untill yellowing)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cinA and Synpcc7942_0281 are separated by 9 nucleotides Synpcc7942_0281 and glyA are separated by 22 nucleotides
Synpcc7942_0280: cinA - competence damage-inducible protein A, at 275,768 to 277,033
cinA
Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116
_0281
Synpcc7942_0282: glyA - serine hydroxymethyltransferase, at 278,139 to 279,422
glyA
Position (kb) 277
278
279 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 276.069 kb on + strand, within cinA at 276.095 kb on + strand, within cinA at 276.103 kb on - strand, within cinA at 276.116 kb on + strand, within cinA at 276.145 kb on - strand, within cinA at 276.182 kb on + strand, within cinA at 276.220 kb on + strand, within cinA at 276.228 kb on - strand, within cinA at 276.251 kb on + strand, within cinA at 276.271 kb on - strand, within cinA at 276.292 kb on + strand, within cinA at 276.292 kb on + strand, within cinA at 276.300 kb on - strand, within cinA at 276.300 kb on - strand, within cinA at 276.316 kb on + strand, within cinA at 276.319 kb on - strand, within cinA at 276.338 kb on - strand, within cinA at 276.348 kb on + strand, within cinA at 276.376 kb on + strand, within cinA at 276.386 kb on + strand, within cinA at 276.409 kb on + strand, within cinA at 276.417 kb on - strand, within cinA at 276.514 kb on + strand, within cinA at 276.521 kb on - strand, within cinA at 276.521 kb on - strand, within cinA at 276.531 kb on - strand, within cinA at 276.572 kb on + strand, within cinA at 276.589 kb on - strand, within cinA at 276.638 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.750 kb on + strand, within cinA at 276.751 kb on - strand, within cinA at 276.772 kb on + strand, within cinA at 276.808 kb on + strand, within cinA at 276.817 kb on + strand, within cinA at 276.822 kb on + strand, within cinA at 276.835 kb on + strand, within cinA at 276.843 kb on - strand, within cinA at 276.867 kb on + strand, within cinA at 276.875 kb on - strand, within cinA at 276.875 kb on - strand, within cinA at 276.909 kb on - strand at 276.929 kb on + strand at 276.942 kb on + strand at 276.947 kb on + strand at 276.962 kb on + strand at 276.972 kb on + strand at 276.988 kb on - strand at 278.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown to static phase (untill yellowing) remove 276,069 + cinA Synpcc7942_0280 0.24 +5.5 276,095 + cinA Synpcc7942_0280 0.26 +4.3 276,103 - cinA Synpcc7942_0280 0.26 +3.1 276,116 + cinA Synpcc7942_0280 0.27 +4.3 276,145 - cinA Synpcc7942_0280 0.30 +4.6 276,182 + cinA Synpcc7942_0280 0.33 +2.5 276,220 + cinA Synpcc7942_0280 0.36 +3.2 276,228 - cinA Synpcc7942_0280 0.36 +4.1 276,251 + cinA Synpcc7942_0280 0.38 +4.8 276,271 - cinA Synpcc7942_0280 0.40 +3.8 276,292 + cinA Synpcc7942_0280 0.41 +4.2 276,292 + cinA Synpcc7942_0280 0.41 +4.2 276,300 - cinA Synpcc7942_0280 0.42 +5.1 276,300 - cinA Synpcc7942_0280 0.42 +4.0 276,316 + cinA Synpcc7942_0280 0.43 +3.0 276,319 - cinA Synpcc7942_0280 0.44 +2.3 276,338 - cinA Synpcc7942_0280 0.45 +2.7 276,348 + cinA Synpcc7942_0280 0.46 +5.0 276,376 + cinA Synpcc7942_0280 0.48 +2.6 276,386 + cinA Synpcc7942_0280 0.49 +3.8 276,409 + cinA Synpcc7942_0280 0.51 +4.4 276,417 - cinA Synpcc7942_0280 0.51 +3.9 276,514 + cinA Synpcc7942_0280 0.59 +5.6 276,521 - cinA Synpcc7942_0280 0.59 +5.7 276,521 - cinA Synpcc7942_0280 0.59 +4.4 276,531 - cinA Synpcc7942_0280 0.60 +3.6 276,572 + cinA Synpcc7942_0280 0.64 +4.2 276,589 - cinA Synpcc7942_0280 0.65 +6.9 276,638 - cinA Synpcc7942_0280 0.69 +6.9 276,695 - cinA Synpcc7942_0280 0.73 +2.8 276,695 - cinA Synpcc7942_0280 0.73 +4.9 276,750 + cinA Synpcc7942_0280 0.78 +5.1 276,751 - cinA Synpcc7942_0280 0.78 +5.3 276,772 + cinA Synpcc7942_0280 0.79 +5.1 276,808 + cinA Synpcc7942_0280 0.82 +2.7 276,817 + cinA Synpcc7942_0280 0.83 +3.8 276,822 + cinA Synpcc7942_0280 0.83 +3.4 276,835 + cinA Synpcc7942_0280 0.84 +2.5 276,843 - cinA Synpcc7942_0280 0.85 +3.7 276,867 + cinA Synpcc7942_0280 0.87 +2.5 276,875 - cinA Synpcc7942_0280 0.87 +2.0 276,875 - cinA Synpcc7942_0280 0.87 +4.8 276,909 - +3.8 276,929 + +4.9 276,942 + +1.3 276,947 + +5.5 276,962 + +4.3 276,972 + +4.4 276,988 - +4.0 278,112 + -1.1
Or see this region's nucleotide sequence