Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2708

Experiment: Putrescine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2706 and Pf6N2E2_2707 overlap by 4 nucleotidesPf6N2E2_2707 and Pf6N2E2_2708 are separated by 8 nucleotidesPf6N2E2_2708 and Pf6N2E2_2709 are separated by 64 nucleotides Pf6N2E2_2706 - Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54), at 3,199,240 to 3,200,160 _2706 Pf6N2E2_2707 - Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54), at 3,200,157 to 3,200,849 _2707 Pf6N2E2_2708 - Lactam utilization protein LamB, at 3,200,858 to 3,201,610 _2708 Pf6N2E2_2709 - Sialic acid transporter (permease) NanT, at 3,201,675 to 3,202,961 _2709 Position (kb) 3200 3201 3202Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3199.975 kb on - strand, within Pf6N2E2_2706at 3200.483 kb on - strand, within Pf6N2E2_2707at 3200.483 kb on - strand, within Pf6N2E2_2707at 3200.576 kb on - strand, within Pf6N2E2_2707at 3200.690 kb on - strand, within Pf6N2E2_2707at 3200.690 kb on - strand, within Pf6N2E2_2707at 3200.709 kb on - strand, within Pf6N2E2_2707at 3200.710 kb on + strand, within Pf6N2E2_2707at 3200.954 kb on - strand, within Pf6N2E2_2708at 3200.954 kb on - strand, within Pf6N2E2_2708at 3200.954 kb on - strand, within Pf6N2E2_2708at 3201.090 kb on + strand, within Pf6N2E2_2708at 3201.091 kb on - strand, within Pf6N2E2_2708at 3201.204 kb on + strand, within Pf6N2E2_2708at 3201.265 kb on - strand, within Pf6N2E2_2708at 3201.265 kb on - strand, within Pf6N2E2_2708at 3201.265 kb on - strand, within Pf6N2E2_2708at 3201.265 kb on - strand, within Pf6N2E2_2708at 3201.265 kb on - strand, within Pf6N2E2_2708at 3201.288 kb on + strand, within Pf6N2E2_2708at 3201.626 kb on - strandat 3201.626 kb on - strandat 3201.626 kb on - strandat 3201.626 kb on - strandat 3201.643 kb on - strandat 3201.643 kb on - strandat 3201.676 kb on + strandat 3201.676 kb on + strandat 3201.743 kb on - strandat 3201.743 kb on - strandat 3201.847 kb on + strand, within Pf6N2E2_2709at 3201.882 kb on - strand, within Pf6N2E2_2709at 3201.971 kb on + strand, within Pf6N2E2_2709at 3201.993 kb on - strand, within Pf6N2E2_2709at 3201.994 kb on + strand, within Pf6N2E2_2709at 3201.994 kb on + strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3201.995 kb on - strand, within Pf6N2E2_2709at 3202.069 kb on + strand, within Pf6N2E2_2709at 3202.069 kb on + strand, within Pf6N2E2_2709at 3202.069 kb on + strand, within Pf6N2E2_2709at 3202.070 kb on - strand, within Pf6N2E2_2709at 3202.070 kb on - strand, within Pf6N2E2_2709at 3202.084 kb on + strand, within Pf6N2E2_2709at 3202.084 kb on + strand, within Pf6N2E2_2709at 3202.084 kb on + strand, within Pf6N2E2_2709at 3202.084 kb on + strand, within Pf6N2E2_2709at 3202.085 kb on - strand, within Pf6N2E2_2709at 3202.085 kb on - strand, within Pf6N2E2_2709at 3202.085 kb on - strand, within Pf6N2E2_2709at 3202.085 kb on - strand, within Pf6N2E2_2709at 3202.093 kb on + strand, within Pf6N2E2_2709at 3202.093 kb on + strand, within Pf6N2E2_2709at 3202.093 kb on + strand, within Pf6N2E2_2709at 3202.094 kb on - strand, within Pf6N2E2_2709at 3202.094 kb on - strand, within Pf6N2E2_2709at 3202.094 kb on - strand, within Pf6N2E2_2709at 3202.121 kb on - strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.137 kb on + strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.138 kb on - strand, within Pf6N2E2_2709at 3202.192 kb on + strand, within Pf6N2E2_2709at 3202.192 kb on + strand, within Pf6N2E2_2709at 3202.193 kb on - strand, within Pf6N2E2_2709at 3202.193 kb on - strand, within Pf6N2E2_2709at 3202.193 kb on - strand, within Pf6N2E2_2709at 3202.193 kb on - strand, within Pf6N2E2_2709at 3202.270 kb on + strand, within Pf6N2E2_2709at 3202.270 kb on + strand, within Pf6N2E2_2709at 3202.317 kb on - strand, within Pf6N2E2_2709at 3202.318 kb on + strand, within Pf6N2E2_2709at 3202.319 kb on - strand, within Pf6N2E2_2709at 3202.319 kb on - strand, within Pf6N2E2_2709at 3202.319 kb on - strand, within Pf6N2E2_2709at 3202.319 kb on - strand, within Pf6N2E2_2709at 3202.439 kb on - strand, within Pf6N2E2_2709at 3202.439 kb on - strand, within Pf6N2E2_2709at 3202.439 kb on - strand, within Pf6N2E2_2709at 3202.606 kb on + strand, within Pf6N2E2_2709at 3202.606 kb on + strand, within Pf6N2E2_2709at 3202.606 kb on + strand, within Pf6N2E2_2709at 3202.606 kb on + strand, within Pf6N2E2_2709at 3202.606 kb on + strand, within Pf6N2E2_2709at 3202.607 kb on - strand, within Pf6N2E2_2709at 3202.607 kb on - strand, within Pf6N2E2_2709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
remove
3,199,975 - Pf6N2E2_2706 0.80 -2.9
3,200,483 - Pf6N2E2_2707 0.47 -1.9
3,200,483 - Pf6N2E2_2707 0.47 -2.7
3,200,576 - Pf6N2E2_2707 0.60 -3.5
3,200,690 - Pf6N2E2_2707 0.77 -1.4
3,200,690 - Pf6N2E2_2707 0.77 -1.7
3,200,709 - Pf6N2E2_2707 0.80 -3.3
3,200,710 + Pf6N2E2_2707 0.80 -3.3
3,200,954 - Pf6N2E2_2708 0.13 -2.4
3,200,954 - Pf6N2E2_2708 0.13 -2.7
3,200,954 - Pf6N2E2_2708 0.13 -4.6
3,201,090 + Pf6N2E2_2708 0.31 -1.2
3,201,091 - Pf6N2E2_2708 0.31 -3.4
3,201,204 + Pf6N2E2_2708 0.46 -1.8
3,201,265 - Pf6N2E2_2708 0.54 -2.8
3,201,265 - Pf6N2E2_2708 0.54 -1.4
3,201,265 - Pf6N2E2_2708 0.54 -4.6
3,201,265 - Pf6N2E2_2708 0.54 -3.4
3,201,265 - Pf6N2E2_2708 0.54 -1.5
3,201,288 + Pf6N2E2_2708 0.57 -2.6
3,201,626 - +0.8
3,201,626 - +0.1
3,201,626 - -0.2
3,201,626 - -0.9
3,201,643 - +0.3
3,201,643 - +0.9
3,201,676 + -0.1
3,201,676 + -0.0
3,201,743 - +0.0
3,201,743 - +1.3
3,201,847 + Pf6N2E2_2709 0.13 +0.2
3,201,882 - Pf6N2E2_2709 0.16 +0.7
3,201,971 + Pf6N2E2_2709 0.23 +0.3
3,201,993 - Pf6N2E2_2709 0.25 -0.2
3,201,994 + Pf6N2E2_2709 0.25 +0.2
3,201,994 + Pf6N2E2_2709 0.25 +2.1
3,201,995 - Pf6N2E2_2709 0.25 -2.0
3,201,995 - Pf6N2E2_2709 0.25 +1.6
3,201,995 - Pf6N2E2_2709 0.25 +1.2
3,201,995 - Pf6N2E2_2709 0.25 +0.0
3,201,995 - Pf6N2E2_2709 0.25 +0.7
3,201,995 - Pf6N2E2_2709 0.25 -0.3
3,201,995 - Pf6N2E2_2709 0.25 +0.6
3,201,995 - Pf6N2E2_2709 0.25 -0.1
3,202,069 + Pf6N2E2_2709 0.31 -0.5
3,202,069 + Pf6N2E2_2709 0.31 -0.2
3,202,069 + Pf6N2E2_2709 0.31 +0.9
3,202,070 - Pf6N2E2_2709 0.31 -0.3
3,202,070 - Pf6N2E2_2709 0.31 -0.4
3,202,084 + Pf6N2E2_2709 0.32 +0.7
3,202,084 + Pf6N2E2_2709 0.32 +1.0
3,202,084 + Pf6N2E2_2709 0.32 +0.1
3,202,084 + Pf6N2E2_2709 0.32 +0.7
3,202,085 - Pf6N2E2_2709 0.32 -0.3
3,202,085 - Pf6N2E2_2709 0.32 -0.5
3,202,085 - Pf6N2E2_2709 0.32 -0.3
3,202,085 - Pf6N2E2_2709 0.32 -0.2
3,202,093 + Pf6N2E2_2709 0.32 +1.4
3,202,093 + Pf6N2E2_2709 0.32 +1.2
3,202,093 + Pf6N2E2_2709 0.32 +0.3
3,202,094 - Pf6N2E2_2709 0.33 +0.5
3,202,094 - Pf6N2E2_2709 0.33 -0.2
3,202,094 - Pf6N2E2_2709 0.33 -0.2
3,202,121 - Pf6N2E2_2709 0.35 -0.8
3,202,137 + Pf6N2E2_2709 0.36 +0.3
3,202,137 + Pf6N2E2_2709 0.36 +1.7
3,202,137 + Pf6N2E2_2709 0.36 +0.9
3,202,137 + Pf6N2E2_2709 0.36 +0.1
3,202,137 + Pf6N2E2_2709 0.36 -1.2
3,202,137 + Pf6N2E2_2709 0.36 +0.5
3,202,137 + Pf6N2E2_2709 0.36 +0.0
3,202,137 + Pf6N2E2_2709 0.36 -1.4
3,202,137 + Pf6N2E2_2709 0.36 -1.0
3,202,137 + Pf6N2E2_2709 0.36 -0.7
3,202,138 - Pf6N2E2_2709 0.36 -0.6
3,202,138 - Pf6N2E2_2709 0.36 +0.5
3,202,138 - Pf6N2E2_2709 0.36 +0.3
3,202,138 - Pf6N2E2_2709 0.36 +0.1
3,202,138 - Pf6N2E2_2709 0.36 -0.9
3,202,138 - Pf6N2E2_2709 0.36 -0.5
3,202,138 - Pf6N2E2_2709 0.36 -0.1
3,202,138 - Pf6N2E2_2709 0.36 -0.0
3,202,138 - Pf6N2E2_2709 0.36 +0.7
3,202,138 - Pf6N2E2_2709 0.36 +0.4
3,202,192 + Pf6N2E2_2709 0.40 +0.4
3,202,192 + Pf6N2E2_2709 0.40 +0.7
3,202,193 - Pf6N2E2_2709 0.40 +1.0
3,202,193 - Pf6N2E2_2709 0.40 -1.3
3,202,193 - Pf6N2E2_2709 0.40 +0.2
3,202,193 - Pf6N2E2_2709 0.40 +0.4
3,202,270 + Pf6N2E2_2709 0.46 +0.4
3,202,270 + Pf6N2E2_2709 0.46 +0.9
3,202,317 - Pf6N2E2_2709 0.50 +0.5
3,202,318 + Pf6N2E2_2709 0.50 +1.2
3,202,319 - Pf6N2E2_2709 0.50 +0.9
3,202,319 - Pf6N2E2_2709 0.50 -0.5
3,202,319 - Pf6N2E2_2709 0.50 -0.4
3,202,319 - Pf6N2E2_2709 0.50 -1.8
3,202,439 - Pf6N2E2_2709 0.59 -0.5
3,202,439 - Pf6N2E2_2709 0.59 +0.6
3,202,439 - Pf6N2E2_2709 0.59 -0.4
3,202,606 + Pf6N2E2_2709 0.72 +0.4
3,202,606 + Pf6N2E2_2709 0.72 +0.1
3,202,606 + Pf6N2E2_2709 0.72 -0.6
3,202,606 + Pf6N2E2_2709 0.72 +0.9
3,202,606 + Pf6N2E2_2709 0.72 +0.1
3,202,607 - Pf6N2E2_2709 0.72 +0.9
3,202,607 - Pf6N2E2_2709 0.72 +0.6

Or see this region's nucleotide sequence