Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_208

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_207 and Pf6N2E2_208 are separated by 259 nucleotidesPf6N2E2_208 and Pf6N2E2_209 are separated by 146 nucleotides Pf6N2E2_207 - related to dolichyl-phosphate mannose synthase, at 258,141 to 260,522 _207 Pf6N2E2_208 - Glycosyl transferase, group 2 family protein, at 260,782 to 263,229 _208 Pf6N2E2_209 - O-antigen export system permease protein RfbD, at 263,376 to 264,194 _209 Position (kb) 260 261 262 263 264Strain fitness (log2 ratio) -2 -1 0 1at 259.829 kb on + strand, within Pf6N2E2_207at 259.829 kb on + strand, within Pf6N2E2_207at 259.829 kb on + strand, within Pf6N2E2_207at 259.829 kb on + strand, within Pf6N2E2_207at 259.830 kb on - strand, within Pf6N2E2_207at 259.830 kb on - strand, within Pf6N2E2_207at 259.830 kb on - strand, within Pf6N2E2_207at 259.831 kb on + strand, within Pf6N2E2_207at 259.831 kb on + strand, within Pf6N2E2_207at 259.831 kb on + strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.832 kb on - strand, within Pf6N2E2_207at 259.844 kb on - strand, within Pf6N2E2_207at 259.844 kb on - strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.882 kb on + strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.883 kb on - strand, within Pf6N2E2_207at 259.993 kb on + strand, within Pf6N2E2_207at 259.993 kb on + strand, within Pf6N2E2_207at 259.993 kb on + strand, within Pf6N2E2_207at 259.994 kb on - strand, within Pf6N2E2_207at 259.994 kb on - strand, within Pf6N2E2_207at 260.146 kb on + strand, within Pf6N2E2_207at 260.147 kb on - strand, within Pf6N2E2_207at 260.158 kb on + strand, within Pf6N2E2_207at 260.173 kb on + strand, within Pf6N2E2_207at 260.174 kb on - strand, within Pf6N2E2_207at 260.427 kb on + strandat 260.479 kb on + strandat 260.480 kb on - strandat 260.527 kb on + strandat 260.527 kb on + strandat 260.553 kb on - strandat 260.586 kb on - strandat 260.754 kb on + strandat 260.783 kb on + strandat 260.783 kb on + strandat 260.784 kb on - strandat 260.784 kb on - strandat 260.784 kb on - strandat 260.785 kb on + strandat 260.785 kb on + strandat 260.785 kb on + strandat 260.785 kb on + strandat 260.786 kb on - strandat 260.786 kb on - strandat 260.786 kb on - strandat 260.786 kb on - strandat 260.796 kb on - strandat 260.970 kb on - strandat 260.999 kb on + strandat 261.000 kb on - strandat 261.000 kb on - strandat 261.000 kb on - strandat 261.000 kb on - strandat 261.146 kb on + strand, within Pf6N2E2_208at 261.291 kb on - strand, within Pf6N2E2_208at 261.515 kb on + strand, within Pf6N2E2_208at 261.515 kb on + strand, within Pf6N2E2_208at 261.515 kb on + strand, within Pf6N2E2_208at 261.516 kb on - strandat 261.776 kb on + strand, within Pf6N2E2_208at 261.783 kb on - strand, within Pf6N2E2_208at 261.783 kb on - strand, within Pf6N2E2_208at 261.861 kb on - strand, within Pf6N2E2_208at 261.863 kb on + strand, within Pf6N2E2_208at 261.864 kb on - strand, within Pf6N2E2_208at 262.035 kb on - strand, within Pf6N2E2_208at 262.037 kb on + strand, within Pf6N2E2_208at 262.038 kb on - strand, within Pf6N2E2_208at 262.274 kb on + strand, within Pf6N2E2_208at 262.274 kb on + strand, within Pf6N2E2_208at 262.275 kb on - strand, within Pf6N2E2_208at 262.319 kb on + strand, within Pf6N2E2_208at 262.320 kb on - strand, within Pf6N2E2_208at 262.320 kb on - strand, within Pf6N2E2_208at 262.427 kb on + strand, within Pf6N2E2_208at 262.427 kb on + strand, within Pf6N2E2_208at 262.427 kb on + strand, within Pf6N2E2_208at 262.428 kb on - strand, within Pf6N2E2_208at 262.428 kb on - strand, within Pf6N2E2_208at 262.428 kb on - strand, within Pf6N2E2_208at 262.540 kb on - strand, within Pf6N2E2_208at 262.541 kb on + strand, within Pf6N2E2_208at 262.542 kb on - strand, within Pf6N2E2_208at 262.542 kb on - strand, within Pf6N2E2_208at 262.830 kb on + strand, within Pf6N2E2_208at 262.832 kb on + strand, within Pf6N2E2_208at 262.990 kb on + strandat 262.991 kb on - strandat 263.255 kb on - strandat 263.266 kb on + strandat 263.266 kb on + strandat 263.267 kb on - strandat 263.379 kb on + strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.588 kb on - strand, within Pf6N2E2_209at 263.624 kb on + strand, within Pf6N2E2_209at 263.625 kb on - strand, within Pf6N2E2_209at 263.656 kb on + strand, within Pf6N2E2_209at 263.657 kb on - strand, within Pf6N2E2_209at 263.664 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.771 kb on - strandat 263.872 kb on + strand, within Pf6N2E2_209at 263.872 kb on + strand, within Pf6N2E2_209at 263.873 kb on - strand, within Pf6N2E2_209at 264.032 kb on - strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.094 kb on + strand, within Pf6N2E2_209at 264.127 kb on + strandat 264.127 kb on + strandat 264.127 kb on + strandat 264.128 kb on - strandat 264.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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259,829 + Pf6N2E2_207 0.71 -0.4
259,829 + Pf6N2E2_207 0.71 +0.4
259,829 + Pf6N2E2_207 0.71 -1.3
259,829 + Pf6N2E2_207 0.71 +1.0
259,830 - Pf6N2E2_207 0.71 +0.3
259,830 - Pf6N2E2_207 0.71 -1.3
259,830 - Pf6N2E2_207 0.71 -0.0
259,831 + Pf6N2E2_207 0.71 -0.1
259,831 + Pf6N2E2_207 0.71 +0.6
259,831 + Pf6N2E2_207 0.71 +1.0
259,832 - Pf6N2E2_207 0.71 +0.1
259,832 - Pf6N2E2_207 0.71 -0.5
259,832 - Pf6N2E2_207 0.71 -0.4
259,832 - Pf6N2E2_207 0.71 +0.7
259,832 - Pf6N2E2_207 0.71 -0.5
259,832 - Pf6N2E2_207 0.71 -0.3
259,844 - Pf6N2E2_207 0.71 +0.4
259,844 - Pf6N2E2_207 0.71 +0.4
259,882 + Pf6N2E2_207 0.73 +0.0
259,882 + Pf6N2E2_207 0.73 +0.4
259,882 + Pf6N2E2_207 0.73 +0.0
259,882 + Pf6N2E2_207 0.73 -1.0
259,882 + Pf6N2E2_207 0.73 +0.5
259,882 + Pf6N2E2_207 0.73 -0.9
259,882 + Pf6N2E2_207 0.73 +1.5
259,882 + Pf6N2E2_207 0.73 +0.7
259,882 + Pf6N2E2_207 0.73 -0.1
259,882 + Pf6N2E2_207 0.73 +0.2
259,883 - Pf6N2E2_207 0.73 +0.4
259,883 - Pf6N2E2_207 0.73 +0.4
259,883 - Pf6N2E2_207 0.73 +0.4
259,883 - Pf6N2E2_207 0.73 -0.4
259,883 - Pf6N2E2_207 0.73 +0.5
259,883 - Pf6N2E2_207 0.73 -0.2
259,883 - Pf6N2E2_207 0.73 +0.6
259,993 + Pf6N2E2_207 0.78 +0.9
259,993 + Pf6N2E2_207 0.78 -1.0
259,993 + Pf6N2E2_207 0.78 +1.7
259,994 - Pf6N2E2_207 0.78 +0.4
259,994 - Pf6N2E2_207 0.78 +1.3
260,146 + Pf6N2E2_207 0.84 -0.6
260,147 - Pf6N2E2_207 0.84 -0.5
260,158 + Pf6N2E2_207 0.85 +0.1
260,173 + Pf6N2E2_207 0.85 +0.3
260,174 - Pf6N2E2_207 0.85 -0.8
260,427 + +0.4
260,479 + -1.0
260,480 - +0.7
260,527 + +0.8
260,527 + -0.7
260,553 - +1.2
260,586 - -0.4
260,754 + -1.6
260,783 + +0.3
260,783 + -0.7
260,784 - -0.4
260,784 - -0.7
260,784 - +0.2
260,785 + +0.7
260,785 + -0.8
260,785 + -0.2
260,785 + +1.0
260,786 - +0.2
260,786 - -1.0
260,786 - +1.2
260,786 - -0.2
260,796 - -0.7
260,970 - +0.6
260,999 + +0.3
261,000 - +0.5
261,000 - +0.1
261,000 - +0.1
261,000 - +0.3
261,146 + Pf6N2E2_208 0.15 -0.4
261,291 - Pf6N2E2_208 0.21 +0.5
261,515 + Pf6N2E2_208 0.30 +0.3
261,515 + Pf6N2E2_208 0.30 +0.3
261,515 + Pf6N2E2_208 0.30 +0.6
261,516 - -1.3
261,776 + Pf6N2E2_208 0.41 -0.9
261,783 - Pf6N2E2_208 0.41 +1.1
261,783 - Pf6N2E2_208 0.41 -0.1
261,861 - Pf6N2E2_208 0.44 -1.5
261,863 + Pf6N2E2_208 0.44 +0.7
261,864 - Pf6N2E2_208 0.44 -0.9
262,035 - Pf6N2E2_208 0.51 -0.8
262,037 + Pf6N2E2_208 0.51 +0.1
262,038 - Pf6N2E2_208 0.51 -0.6
262,274 + Pf6N2E2_208 0.61 +0.0
262,274 + Pf6N2E2_208 0.61 -0.7
262,275 - Pf6N2E2_208 0.61 +1.4
262,319 + Pf6N2E2_208 0.63 -0.6
262,320 - Pf6N2E2_208 0.63 +0.3
262,320 - Pf6N2E2_208 0.63 +0.3
262,427 + Pf6N2E2_208 0.67 -1.9
262,427 + Pf6N2E2_208 0.67 -0.1
262,427 + Pf6N2E2_208 0.67 -0.5
262,428 - Pf6N2E2_208 0.67 +1.4
262,428 - Pf6N2E2_208 0.67 -2.5
262,428 - Pf6N2E2_208 0.67 -0.3
262,540 - Pf6N2E2_208 0.72 -0.6
262,541 + Pf6N2E2_208 0.72 -0.8
262,542 - Pf6N2E2_208 0.72 +0.2
262,542 - Pf6N2E2_208 0.72 +0.9
262,830 + Pf6N2E2_208 0.84 +0.5
262,832 + Pf6N2E2_208 0.84 -0.7
262,990 + -0.1
262,991 - +0.5
263,255 - +1.4
263,266 + +0.4
263,266 + +0.1
263,267 - +0.2
263,379 + +0.8
263,380 - +0.8
263,380 - +0.4
263,380 - -0.4
263,380 - -0.4
263,588 - Pf6N2E2_209 0.26 -0.2
263,624 + Pf6N2E2_209 0.30 +0.4
263,625 - Pf6N2E2_209 0.30 +0.5
263,656 + Pf6N2E2_209 0.34 +0.5
263,657 - Pf6N2E2_209 0.34 -0.0
263,664 + Pf6N2E2_209 0.35 -0.1
263,770 + Pf6N2E2_209 0.48 +0.2
263,770 + Pf6N2E2_209 0.48 +0.9
263,770 + Pf6N2E2_209 0.48 +0.7
263,771 - +0.7
263,872 + Pf6N2E2_209 0.61 +0.3
263,872 + Pf6N2E2_209 0.61 +0.1
263,873 - Pf6N2E2_209 0.61 +0.3
264,032 - Pf6N2E2_209 0.80 -0.4
264,069 + Pf6N2E2_209 0.85 +0.2
264,069 + Pf6N2E2_209 0.85 -0.0
264,069 + Pf6N2E2_209 0.85 +0.0
264,069 + Pf6N2E2_209 0.85 +1.0
264,069 + Pf6N2E2_209 0.85 +1.3
264,070 - Pf6N2E2_209 0.85 -0.2
264,070 - Pf6N2E2_209 0.85 +1.6
264,070 - Pf6N2E2_209 0.85 -0.6
264,070 - Pf6N2E2_209 0.85 +1.3
264,070 - Pf6N2E2_209 0.85 -0.1
264,070 - Pf6N2E2_209 0.85 +0.0
264,094 + Pf6N2E2_209 0.88 +0.4
264,127 + -0.4
264,127 + +1.6
264,127 + +0.3
264,128 - -0.5
264,128 - +0.3

Or see this region's nucleotide sequence