Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06890

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
1,481,537	+		LRK54_RS06880	0.25	+0.2
1,481,537	+		LRK54_RS06880	0.25	-0.3
1,481,537	+		LRK54_RS06880	0.25	-1.1
1,481,538	-		LRK54_RS06880	0.25	-1.0
1,481,538	-		LRK54_RS06880	0.25	+0.3
1,481,538	-		LRK54_RS06880	0.25	+2.2
1,481,538	-		LRK54_RS06880	0.25	-1.5
1,481,663	+		LRK54_RS06880	0.55	-1.8
1,481,663	+		LRK54_RS06880	0.55	-0.8
1,481,663	+		LRK54_RS06880	0.55	+0.1
1,481,663	+		LRK54_RS06880	0.55	-0.1
1,481,664	-		LRK54_RS06880	0.55	-0.6
1,481,725	+		LRK54_RS06880	0.70	-0.6
1,481,726	-		LRK54_RS06880	0.70	-0.1
1,481,726	-		LRK54_RS06880	0.70	-1.5
1,481,786	+		LRK54_RS06880	0.85	+1.5
1,481,786	+		LRK54_RS06880	0.85	-1.0
1,481,786	+		LRK54_RS06880	0.85	-0.3
1,481,786	+		LRK54_RS06880	0.85	+0.4
1,481,787	-		LRK54_RS06880	0.85	+0.1
1,481,787	-		LRK54_RS06880	0.85	-0.2
1,481,787	-		LRK54_RS06880	0.85	-1.9
1,481,787	-		LRK54_RS06880	0.85	-0.6
1,481,867	+				-0.2
1,481,867	+				-0.4
1,481,867	+				+0.2
1,481,867	+				+0.4
1,481,867	+				+2.2
1,481,867	+				-0.4
1,481,867	+				-0.2
1,481,867	+				-0.7
1,481,867	+				-0.4
1,481,867	+				+2.0
1,481,867	+				+0.3
1,481,867	+				+0.0
1,481,867	+				-1.5
1,481,867	+				+1.1
1,481,867	+				-2.3
1,481,867	+				+0.6
1,481,867	+				+1.1
1,481,867	+				-0.2
1,481,867	+				-0.9
1,481,867	+				-0.1
1,481,867	+				+0.7
1,481,867	+				-0.8
1,481,867	+				-0.5
1,481,867	+				-0.5
1,481,867	+				+0.2
1,481,867	+				+1.2
1,481,867	+				-0.6
1,481,867	+				-0.2
1,481,868	-				-2.4
1,481,868	-				-0.8
1,481,868	-				+1.0
1,481,868	-				+0.7
1,481,868	-				-0.1
1,481,868	-				-1.0
1,481,868	-				+2.2
1,481,868	-				-0.7
1,481,868	-				+0.6
1,481,868	-				+2.2
1,481,868	-				-1.8
1,481,868	-				-0.5
1,481,868	-				+0.7
1,481,868	-				-1.6
1,481,868	-				+0.9
1,481,868	-				-1.3
1,481,868	-				-0.6
1,481,868	-				-0.6
1,481,868	-				-0.2
1,481,868	-				-1.5
1,481,873	+				-0.2
1,481,873	+				-0.8
1,481,873	+				+1.0
1,481,873	+				-0.6
1,481,873	+				-0.8
1,481,873	+				+1.3
1,481,873	+				+0.7
1,481,873	+				+0.5
1,481,873	+				-0.8
1,481,873	+				+0.5
1,481,873	+				+0.2
1,481,873	+				+2.7
1,481,873	+				-1.1
1,481,874	-				-1.0
1,481,874	-				-0.5
1,481,874	-				+0.2
1,481,874	-				-0.5
1,481,874	-				+1.4
1,481,874	-				-0.1
1,481,874	-				-1.3
1,481,874	-				+1.4
1,481,874	-				-0.2
1,481,874	-				-2.7
1,481,874	-				-0.9
1,481,874	-				-1.5
1,481,874	-				-0.5
1,481,874	-				+0.5
1,481,874	-				-1.4
1,481,874	-				-1.8
1,481,874	-				-1.5
1,481,874	-				-0.8
1,481,874	-				-0.6
1,481,874	-				-1.8
1,481,874	-				+0.1
1,481,874	-				+2.4
1,481,874	-				-0.6
1,481,874	-				-0.9
1,481,874	-				-2.3
1,481,874	-				-0.7
1,481,874	-				-1.3
1,481,874	-				-1.6
1,481,874	-				+1.6
1,481,874	-				-0.8
1,481,874	-				-1.3
1,481,875	+				-0.2
1,481,875	+				-1.4
1,481,875	+				-0.6
1,481,875	+				-1.0
1,481,875	+				-3.0
1,481,875	+				-1.3
1,481,875	+				+1.2
1,481,875	+				+0.8
1,481,875	+				-1.5
1,481,875	+				-0.8
1,481,876	-				-0.6
1,481,876	-				-0.4
1,481,876	-				-1.6
1,481,876	-				-0.1
1,481,876	-				-1.5
1,481,876	-				-2.7
1,481,876	-				-2.4
1,481,887	+				-0.0
1,481,888	-				-1.5
1,482,303	+		LRK54_RS06885	0.84	+0.6
1,482,304	+		LRK54_RS06885	0.85	-1.1
1,482,304	+		LRK54_RS06885	0.85	-1.5
1,482,304	+		LRK54_RS06885	0.85	-2.6
1,482,304	+		LRK54_RS06885	0.85	-0.1
1,482,304	+		LRK54_RS06885	0.85	-1.0
1,482,304	+		LRK54_RS06885	0.85	-1.9
1,482,304	+		LRK54_RS06885	0.85	-0.4
1,482,304	+		LRK54_RS06885	0.85	-0.6
1,482,304	+		LRK54_RS06885	0.85	+0.6
1,482,304	+		LRK54_RS06885	0.85	-0.6
1,482,304	+		LRK54_RS06885	0.85	+0.2
1,482,304	+		LRK54_RS06885	0.85	-1.4
1,482,304	+		LRK54_RS06885	0.85	-0.6
1,482,304	+		LRK54_RS06885	0.85	-1.4
1,482,304	+		LRK54_RS06885	0.85	-3.1
1,482,304	+		LRK54_RS06885	0.85	-0.4
1,482,304	+		LRK54_RS06885	0.85	-1.1
1,482,304	+		LRK54_RS06885	0.85	-1.0
1,482,304	+		LRK54_RS06885	0.85	-0.8
1,482,304	+		LRK54_RS06885	0.85	-1.3
1,482,304	+		LRK54_RS06885	0.85	-2.1
1,482,304	+		LRK54_RS06885	0.85	-2.7
1,482,304	+		LRK54_RS06885	0.85	-1.1
1,482,304	+		LRK54_RS06885	0.85	-2.1
1,482,304	+		LRK54_RS06885	0.85	-2.8
1,482,304	+		LRK54_RS06885	0.85	-3.7
1,482,304	+		LRK54_RS06885	0.85	+0.2
1,482,305	-		LRK54_RS06885	0.85	-3.0
1,482,305	-		LRK54_RS06885	0.85	+2.2
1,482,305	-		LRK54_RS06885	0.85	-1.3
1,482,305	-		LRK54_RS06885	0.85	-2.7
1,482,305	-		LRK54_RS06885	0.85	-1.3
1,482,305	-		LRK54_RS06885	0.85	+0.2
1,482,305	-		LRK54_RS06885	0.85	-1.0
1,482,305	-		LRK54_RS06885	0.85	-1.0
1,482,305	-		LRK54_RS06885	0.85	-1.1
1,482,305	-		LRK54_RS06885	0.85	-2.5
1,482,305	-		LRK54_RS06885	0.85	-2.2
1,482,305	-		LRK54_RS06885	0.85	-1.3
1,482,305	-		LRK54_RS06885	0.85	-1.0
1,482,305	-		LRK54_RS06885	0.85	-2.6
1,482,305	-		LRK54_RS06885	0.85	-2.0
1,482,305	-		LRK54_RS06885	0.85	+0.6
1,482,305	-		LRK54_RS06885	0.85	+1.2
1,482,370	+				-0.5
1,482,370	+				+0.8
1,482,446	+				+0.2
1,482,446	+				+0.5
1,482,446	+				-0.3
1,482,446	+				-0.0
1,482,446	+				+0.4
1,482,446	+				-1.0
1,482,446	+				+0.7
1,482,446	+				-0.2
1,482,446	+				-0.3
1,482,446	+				+0.2
1,482,446	+				+0.1
1,482,446	+				-0.6
1,482,446	+				-0.2
1,482,446	+				-0.4
1,482,446	+				-0.5
1,482,446	+				+1.0
1,482,446	+				-1.3
1,482,446	+				+0.3
1,482,446	+				-0.4
1,482,446	+				-0.4
1,482,446	+				+0.5
1,482,446	+				-0.6
1,482,446	+				+0.2
1,482,447	-				+0.4
1,482,447	-				-0.0
1,482,447	-				-0.2
1,482,447	-				-0.9
1,482,447	-				-0.8
1,482,447	-				-0.4
1,482,447	-				-0.9
1,482,447	-				-1.3
1,482,447	-				+0.7
1,482,447	-				+0.3
1,482,447	-				-0.2
1,482,447	-				-1.5
1,482,447	-				+0.6
1,482,447	-				+0.4
1,482,447	-				-0.9
1,482,447	-				+0.6
1,482,447	-				-0.8
1,482,447	-				+0.9
1,482,447	-				-1.1
1,482,447	-				-0.7
1,482,447	-				+0.1
1,482,447	-				+1.7
1,482,447	-				+0.3
1,482,447	-				-0.0
1,482,509	+				+0.1
1,482,509	+				-0.1
1,482,510	-				+0.5
1,482,520	+				-0.8
1,482,524	+				-0.9
1,482,524	+				-1.5
1,482,524	+				-0.4
1,482,524	+				+0.2
1,482,524	+				-1.4
1,482,524	+				-1.0
1,482,524	+				+0.6
1,482,524	+				+0.0
1,482,524	+				-0.1
1,482,524	+				-0.1
1,482,524	+				+0.1
1,482,524	+				+0.4
1,482,524	+				-0.5
1,482,524	+				-0.1
1,482,524	+				+0.3
1,482,524	+				+1.6
1,482,524	+				+0.5
1,482,525	-				-1.1
1,482,525	-				-0.4
1,482,525	-				-0.7
1,482,525	-				+0.3
1,482,525	-				+1.0
1,482,525	-				+0.8
1,482,525	-				-0.5
1,482,525	-				-0.7
1,482,525	-				-1.3
1,482,525	-				-0.6
1,482,525	-				+0.1
1,482,525	-				+0.7
1,482,525	-				-0.3
1,482,525	-				+0.3
1,482,525	-				-0.1
1,482,527	+				-1.0
1,482,527	+				-0.1
1,482,527	+				-1.3
1,482,527	+				-0.7
1,482,527	+				+0.5
1,482,527	+				+1.3
1,482,527	+				+1.4
1,482,527	+				+0.8
1,482,527	+				+0.3
1,482,527	+				-0.7
1,482,527	+				-0.2
1,482,527	+				+1.1
1,482,527	+				-0.7
1,482,527	+				+0.1
1,482,527	+				-1.7
1,482,527	+				-0.4
1,482,527	+				+0.1
1,482,527	+				-0.7
1,482,527	+				-0.6
1,482,527	+				+0.2
1,482,527	+				-1.1
1,482,527	+				-0.4
1,482,528	-				+0.5
1,482,528	-				+0.4
1,482,528	-				-0.3
1,482,528	-				-1.5
1,482,528	-				+0.4
1,482,528	-				-0.4
1,482,528	-				-0.4
1,482,528	-				+0.5
1,482,528	-				-0.4
1,482,528	-				+0.8
1,482,528	-				+0.5
1,482,528	-				+1.5
1,482,605	+		LRK54_RS06890	0.15	-0.7
1,482,605	+		LRK54_RS06890	0.15	-0.5
1,482,605	+		LRK54_RS06890	0.15	+1.0
1,482,605	+		LRK54_RS06890	0.15	-0.2
1,482,605	+		LRK54_RS06890	0.15	+0.2
1,482,605	+		LRK54_RS06890	0.15	+1.6
1,482,605	+		LRK54_RS06890	0.15	-0.7
1,482,605	+		LRK54_RS06890	0.15	+0.1
1,482,605	+		LRK54_RS06890	0.15	+0.2
1,482,605	+		LRK54_RS06890	0.15	-0.0
1,482,605	+		LRK54_RS06890	0.15	+0.4
1,482,605	+		LRK54_RS06890	0.15	+0.8
1,482,605	+		LRK54_RS06890	0.15	+1.9
1,482,605	+		LRK54_RS06890	0.15	+1.2
1,482,605	+		LRK54_RS06890	0.15	+0.4
1,482,605	+		LRK54_RS06890	0.15	-1.4
1,482,605	+		LRK54_RS06890	0.15	+0.5
1,482,605	+		LRK54_RS06890	0.15	-0.0
1,482,605	+		LRK54_RS06890	0.15	-0.5
1,482,605	+		LRK54_RS06890	0.15	+1.0
1,482,605	+		LRK54_RS06890	0.15	-0.2
1,482,605	+		LRK54_RS06890	0.15	+1.2
1,482,605	+		LRK54_RS06890	0.15	-0.6
1,482,605	+		LRK54_RS06890	0.15	-0.0
1,482,605	+		LRK54_RS06890	0.15	-2.0
1,482,605	+		LRK54_RS06890	0.15	+0.8
1,482,605	+		LRK54_RS06890	0.15	-1.3
1,482,605	+		LRK54_RS06890	0.15	-0.3
1,482,605	+		LRK54_RS06890	0.15	+0.4
1,482,605	+		LRK54_RS06890	0.15	+0.6
1,482,605	+		LRK54_RS06890	0.15	-1.0
1,482,605	+		LRK54_RS06890	0.15	+0.5
1,482,605	+		LRK54_RS06890	0.15	+0.8
1,482,605	+		LRK54_RS06890	0.15	-1.8
1,482,605	+		LRK54_RS06890	0.15	+0.1
1,482,605	+		LRK54_RS06890	0.15	+0.1
1,482,605	+		LRK54_RS06890	0.15	-0.2
1,482,605	+		LRK54_RS06890	0.15	+0.1
1,482,605	+		LRK54_RS06890	0.15	+0.5
1,482,605	+		LRK54_RS06890	0.15	+0.0
1,482,605	+		LRK54_RS06890	0.15	+0.3
1,482,605	+		LRK54_RS06890	0.15	+0.2
1,482,605	+		LRK54_RS06890	0.15	+0.2
1,482,605	+		LRK54_RS06890	0.15	+0.1
1,482,605	+		LRK54_RS06890	0.15	-0.9
1,482,605	+		LRK54_RS06890	0.15	-1.1
1,482,606	-		LRK54_RS06890	0.15	+0.6
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	+0.5
1,482,606	-		LRK54_RS06890	0.15	+0.7
1,482,606	-		LRK54_RS06890	0.15	-0.1
1,482,606	-		LRK54_RS06890	0.15	-0.1
1,482,606	-		LRK54_RS06890	0.15	-0.1
1,482,606	-		LRK54_RS06890	0.15	+2.0
1,482,606	-		LRK54_RS06890	0.15	+0.1
1,482,606	-		LRK54_RS06890	0.15	+0.3
1,482,606	-		LRK54_RS06890	0.15	+0.2
1,482,606	-		LRK54_RS06890	0.15	+0.9
1,482,606	-		LRK54_RS06890	0.15	+0.2
1,482,606	-		LRK54_RS06890	0.15	-1.7
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	+0.5
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	-0.5
1,482,606	-		LRK54_RS06890	0.15	-0.2
1,482,606	-		LRK54_RS06890	0.15	+0.3
1,482,606	-		LRK54_RS06890	0.15	-0.4
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	-1.6
1,482,606	-		LRK54_RS06890	0.15	-0.1
1,482,606	-		LRK54_RS06890	0.15	-2.4
1,482,606	-		LRK54_RS06890	0.15	-1.5
1,482,606	-		LRK54_RS06890	0.15	-0.2
1,482,606	-		LRK54_RS06890	0.15	-0.2
1,482,606	-		LRK54_RS06890	0.15	-0.8
1,482,606	-		LRK54_RS06890	0.15	-0.0
1,482,606	-		LRK54_RS06890	0.15	-0.9
1,482,606	-		LRK54_RS06890	0.15	-0.9
1,482,606	-		LRK54_RS06890	0.15	-0.0
1,482,606	-		LRK54_RS06890	0.15	-0.7
1,482,606	-		LRK54_RS06890	0.15	-0.8
1,482,606	-		LRK54_RS06890	0.15	-1.3
1,482,606	-		LRK54_RS06890	0.15	+2.2
1,482,606	-		LRK54_RS06890	0.15	-1.1
1,482,606	-		LRK54_RS06890	0.15	+0.2
1,482,606	-		LRK54_RS06890	0.15	-1.4
1,482,761	+		LRK54_RS06890	0.30	-1.3
1,482,761	+		LRK54_RS06890	0.30	-0.4
1,482,761	+		LRK54_RS06890	0.30	-0.5
1,482,761	+		LRK54_RS06890	0.30	-0.0
1,482,761	+		LRK54_RS06890	0.30	-1.3
1,482,761	+		LRK54_RS06890	0.30	+0.1
1,482,762	-		LRK54_RS06890	0.30	-0.3
1,482,762	-		LRK54_RS06890	0.30	-0.7
1,482,762	-		LRK54_RS06890	0.30	+1.4
1,482,762	-		LRK54_RS06890	0.30	-1.1
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1,482,762	-		LRK54_RS06890	0.30	+0.6
1,482,791	+		LRK54_RS06890	0.32	+0.9
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1,483,094	+		LRK54_RS06890	0.61	+0.2
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1,483,095	-		LRK54_RS06890	0.61	+1.0
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1,483,095	-		LRK54_RS06890	0.61	+1.2
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