Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23605 and CA265_RS23610 are separated by 2 nucleotides CA265_RS23610 and CA265_RS23615 overlap by 1 nucleotides CA265_RS23615 and CA265_RS23620 are separated by 8 nucleotides CA265_RS23620 and CA265_RS23625 are separated by 89 nucleotides
CA265_RS23605: CA265_RS23605 - alkaline phosphatase, at 5,767,364 to 5,768,023
_RS23605
CA265_RS23610: CA265_RS23610 - inorganic pyrophosphatase, at 5,768,026 to 5,768,577
_RS23610
CA265_RS23615: CA265_RS23615 - hemolysin, at 5,768,577 to 5,770,001
_RS23615
CA265_RS23620: CA265_RS23620 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 5,770,010 to 5,770,714
_RS23620
CA265_RS23625: CA265_RS23625 - hypothetical protein, at 5,770,804 to 5,771,424
_RS23625
Position (kb) 5768
5769
5770
5771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5767.639 kb on - strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.643 kb on + strand, within CA265_RS23605 at 5767.680 kb on - strand, within CA265_RS23605 at 5767.683 kb on + strand, within CA265_RS23605 at 5767.684 kb on - strand, within CA265_RS23605 at 5767.701 kb on + strand, within CA265_RS23605 at 5767.701 kb on - strand, within CA265_RS23605 at 5767.708 kb on + strand, within CA265_RS23605 at 5767.731 kb on + strand, within CA265_RS23605 at 5767.750 kb on + strand, within CA265_RS23605 at 5767.757 kb on - strand, within CA265_RS23605 at 5767.757 kb on - strand, within CA265_RS23605 at 5767.817 kb on + strand, within CA265_RS23605 at 5767.819 kb on + strand, within CA265_RS23605 at 5767.819 kb on + strand, within CA265_RS23605 at 5767.918 kb on + strand, within CA265_RS23605 at 5767.948 kb on + strand, within CA265_RS23605 at 5767.978 kb on + strand at 5767.978 kb on + strand at 5768.570 kb on + strand at 5768.605 kb on + strand at 5768.716 kb on + strand at 5768.717 kb on - strand at 5768.784 kb on - strand, within CA265_RS23615 at 5768.835 kb on - strand, within CA265_RS23615 at 5768.870 kb on + strand, within CA265_RS23615 at 5768.916 kb on - strand, within CA265_RS23615 at 5768.916 kb on - strand, within CA265_RS23615 at 5768.976 kb on - strand, within CA265_RS23615 at 5768.990 kb on + strand, within CA265_RS23615 at 5768.991 kb on - strand, within CA265_RS23615 at 5768.991 kb on - strand, within CA265_RS23615 at 5769.031 kb on + strand, within CA265_RS23615 at 5769.100 kb on + strand, within CA265_RS23615 at 5769.128 kb on + strand, within CA265_RS23615 at 5769.148 kb on + strand, within CA265_RS23615 at 5769.152 kb on + strand, within CA265_RS23615 at 5769.153 kb on - strand, within CA265_RS23615 at 5769.153 kb on - strand, within CA265_RS23615 at 5769.218 kb on + strand, within CA265_RS23615 at 5769.219 kb on - strand, within CA265_RS23615 at 5769.237 kb on + strand, within CA265_RS23615 at 5769.244 kb on + strand, within CA265_RS23615 at 5769.271 kb on + strand, within CA265_RS23615 at 5769.272 kb on - strand, within CA265_RS23615 at 5769.276 kb on - strand, within CA265_RS23615 at 5769.276 kb on - strand, within CA265_RS23615 at 5769.304 kb on + strand, within CA265_RS23615 at 5769.314 kb on + strand, within CA265_RS23615 at 5769.354 kb on - strand, within CA265_RS23615 at 5769.407 kb on + strand, within CA265_RS23615 at 5769.445 kb on + strand, within CA265_RS23615 at 5769.447 kb on - strand, within CA265_RS23615 at 5769.550 kb on - strand, within CA265_RS23615 at 5769.610 kb on + strand, within CA265_RS23615 at 5769.625 kb on + strand, within CA265_RS23615 at 5769.626 kb on - strand, within CA265_RS23615 at 5769.653 kb on + strand, within CA265_RS23615 at 5769.664 kb on + strand, within CA265_RS23615 at 5769.665 kb on - strand, within CA265_RS23615 at 5769.673 kb on + strand, within CA265_RS23615 at 5769.673 kb on + strand, within CA265_RS23615 at 5769.674 kb on - strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.778 kb on + strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.779 kb on - strand, within CA265_RS23615 at 5769.780 kb on + strand, within CA265_RS23615 at 5769.780 kb on + strand, within CA265_RS23615 at 5769.869 kb on + strand at 5769.901 kb on - strand at 5769.915 kb on - strand at 5769.984 kb on - strand at 5770.000 kb on - strand at 5770.010 kb on - strand at 5770.016 kb on - strand at 5770.023 kb on - strand at 5770.034 kb on - strand at 5770.050 kb on - strand at 5770.052 kb on - strand at 5770.052 kb on - strand at 5770.057 kb on + strand at 5770.105 kb on - strand, within CA265_RS23620 at 5770.322 kb on - strand, within CA265_RS23620 at 5770.322 kb on - strand, within CA265_RS23620 at 5770.357 kb on - strand, within CA265_RS23620 at 5770.398 kb on + strand, within CA265_RS23620 at 5770.418 kb on + strand, within CA265_RS23620 at 5770.418 kb on + strand, within CA265_RS23620 at 5770.419 kb on - strand, within CA265_RS23620 at 5770.419 kb on - strand, within CA265_RS23620 at 5770.524 kb on - strand, within CA265_RS23620 at 5770.525 kb on + strand, within CA265_RS23620 at 5770.540 kb on - strand, within CA265_RS23620 at 5770.567 kb on + strand, within CA265_RS23620 at 5770.603 kb on + strand, within CA265_RS23620 at 5770.648 kb on + strand at 5770.648 kb on + strand at 5770.649 kb on - strand at 5770.678 kb on - strand at 5770.788 kb on - strand at 5770.835 kb on - strand at 5770.850 kb on + strand at 5770.877 kb on - strand, within CA265_RS23625 at 5770.884 kb on + strand, within CA265_RS23625 at 5770.905 kb on - strand, within CA265_RS23625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol% remove 5,767,639 - CA265_RS23605 0.42 -1.6 5,767,643 + CA265_RS23605 0.42 +0.2 5,767,643 + CA265_RS23605 0.42 +0.3 5,767,643 + CA265_RS23605 0.42 -0.2 5,767,643 + CA265_RS23605 0.42 +0.6 5,767,680 - CA265_RS23605 0.48 -1.4 5,767,683 + CA265_RS23605 0.48 +1.2 5,767,684 - CA265_RS23605 0.48 -0.8 5,767,701 + CA265_RS23605 0.51 +1.0 5,767,701 - CA265_RS23605 0.51 -0.9 5,767,708 + CA265_RS23605 0.52 +0.5 5,767,731 + CA265_RS23605 0.56 +0.6 5,767,750 + CA265_RS23605 0.58 +0.9 5,767,757 - CA265_RS23605 0.60 +0.6 5,767,757 - CA265_RS23605 0.60 +0.8 5,767,817 + CA265_RS23605 0.69 -0.6 5,767,819 + CA265_RS23605 0.69 +1.9 5,767,819 + CA265_RS23605 0.69 +0.6 5,767,918 + CA265_RS23605 0.84 +0.0 5,767,948 + CA265_RS23605 0.88 +2.5 5,767,978 + +0.6 5,767,978 + +1.6 5,768,570 + -0.4 5,768,605 + -1.5 5,768,716 + -1.6 5,768,717 - -0.2 5,768,784 - CA265_RS23615 0.15 -0.2 5,768,835 - CA265_RS23615 0.18 -1.2 5,768,870 + CA265_RS23615 0.21 +0.1 5,768,916 - CA265_RS23615 0.24 +1.2 5,768,916 - CA265_RS23615 0.24 -1.0 5,768,976 - CA265_RS23615 0.28 -0.4 5,768,990 + CA265_RS23615 0.29 -0.4 5,768,991 - CA265_RS23615 0.29 -1.0 5,768,991 - CA265_RS23615 0.29 -0.4 5,769,031 + CA265_RS23615 0.32 -0.6 5,769,100 + CA265_RS23615 0.37 -1.3 5,769,128 + CA265_RS23615 0.39 -1.2 5,769,148 + CA265_RS23615 0.40 -1.2 5,769,152 + CA265_RS23615 0.40 -0.5 5,769,153 - CA265_RS23615 0.40 -0.9 5,769,153 - CA265_RS23615 0.40 -1.3 5,769,218 + CA265_RS23615 0.45 +0.1 5,769,219 - CA265_RS23615 0.45 -0.1 5,769,237 + CA265_RS23615 0.46 -1.5 5,769,244 + CA265_RS23615 0.47 -1.1 5,769,271 + CA265_RS23615 0.49 -0.4 5,769,272 - CA265_RS23615 0.49 -1.5 5,769,276 - CA265_RS23615 0.49 -1.9 5,769,276 - CA265_RS23615 0.49 -1.0 5,769,304 + CA265_RS23615 0.51 +0.2 5,769,314 + CA265_RS23615 0.52 -1.2 5,769,354 - CA265_RS23615 0.55 -0.1 5,769,407 + CA265_RS23615 0.58 -0.0 5,769,445 + CA265_RS23615 0.61 -0.7 5,769,447 - CA265_RS23615 0.61 -1.7 5,769,550 - CA265_RS23615 0.68 -0.6 5,769,610 + CA265_RS23615 0.72 -1.6 5,769,625 + CA265_RS23615 0.74 -3.2 5,769,626 - CA265_RS23615 0.74 -0.5 5,769,653 + CA265_RS23615 0.76 +1.0 5,769,664 + CA265_RS23615 0.76 -0.2 5,769,665 - CA265_RS23615 0.76 -0.6 5,769,673 + CA265_RS23615 0.77 -1.2 5,769,673 + CA265_RS23615 0.77 -0.4 5,769,674 - CA265_RS23615 0.77 -1.3 5,769,778 + CA265_RS23615 0.84 -1.4 5,769,778 + CA265_RS23615 0.84 -2.0 5,769,778 + CA265_RS23615 0.84 -0.9 5,769,778 + CA265_RS23615 0.84 -1.3 5,769,778 + CA265_RS23615 0.84 -2.5 5,769,779 - CA265_RS23615 0.84 -1.3 5,769,779 - CA265_RS23615 0.84 -1.6 5,769,779 - CA265_RS23615 0.84 -1.0 5,769,780 + CA265_RS23615 0.84 +0.0 5,769,780 + CA265_RS23615 0.84 -0.7 5,769,869 + -1.3 5,769,901 - -0.9 5,769,915 - +0.6 5,769,984 - -1.0 5,770,000 - -0.2 5,770,010 - +0.7 5,770,016 - -1.8 5,770,023 - -0.2 5,770,034 - +0.1 5,770,050 - -0.1 5,770,052 - +0.3 5,770,052 - -0.6 5,770,057 + +1.2 5,770,105 - CA265_RS23620 0.13 -1.1 5,770,322 - CA265_RS23620 0.44 -0.9 5,770,322 - CA265_RS23620 0.44 -1.6 5,770,357 - CA265_RS23620 0.49 +0.5 5,770,398 + CA265_RS23620 0.55 +0.5 5,770,418 + CA265_RS23620 0.58 +0.8 5,770,418 + CA265_RS23620 0.58 +0.6 5,770,419 - CA265_RS23620 0.58 +0.1 5,770,419 - CA265_RS23620 0.58 -0.1 5,770,524 - CA265_RS23620 0.73 +1.1 5,770,525 + CA265_RS23620 0.73 -0.2 5,770,540 - CA265_RS23620 0.75 +0.1 5,770,567 + CA265_RS23620 0.79 +0.4 5,770,603 + CA265_RS23620 0.84 +0.2 5,770,648 + +1.6 5,770,648 + +0.5 5,770,649 - +0.8 5,770,678 - -0.4 5,770,788 - +0.1 5,770,835 - +0.4 5,770,850 + -0.5 5,770,877 - CA265_RS23625 0.12 +1.0 5,770,884 + CA265_RS23625 0.13 +0.4 5,770,905 - CA265_RS23625 0.16 +0.4
Or see this region's nucleotide sequence