Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03675 and CA265_RS03680 overlap by 11 nucleotides CA265_RS03680 and CA265_RS03685 are separated by 2 nucleotides CA265_RS03685 and CA265_RS03690 are separated by 24 nucleotides
CA265_RS03675: CA265_RS03675 - hypothetical protein, at 876,042 to 876,695
_RS03675
CA265_RS03680: CA265_RS03680 - RNA 2'-phosphotransferase, at 876,685 to 877,227
_RS03680
CA265_RS03685: CA265_RS03685 - serine/threonine protein phosphatase, at 877,230 to 877,961
_RS03685
CA265_RS03690: CA265_RS03690 - nicotinate phosphoribosyltransferase, at 877,986 to 879,443
_RS03690
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.304 kb on + strand, within CA265_RS03675 at 876.304 kb on + strand, within CA265_RS03675 at 876.305 kb on - strand, within CA265_RS03675 at 876.333 kb on + strand, within CA265_RS03675 at 876.500 kb on + strand, within CA265_RS03675 at 876.538 kb on + strand, within CA265_RS03675 at 876.607 kb on + strand, within CA265_RS03675 at 876.694 kb on - strand at 876.711 kb on + strand at 876.711 kb on + strand at 876.723 kb on - strand at 876.755 kb on + strand, within CA265_RS03680 at 876.854 kb on - strand, within CA265_RS03680 at 876.854 kb on - strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.933 kb on + strand, within CA265_RS03680 at 876.934 kb on - strand, within CA265_RS03680 at 876.971 kb on + strand, within CA265_RS03680 at 876.972 kb on - strand, within CA265_RS03680 at 876.982 kb on + strand, within CA265_RS03680 at 876.982 kb on + strand, within CA265_RS03680 at 877.015 kb on - strand, within CA265_RS03680 at 877.086 kb on + strand, within CA265_RS03680 at 877.099 kb on - strand, within CA265_RS03680 at 877.116 kb on + strand, within CA265_RS03680 at 877.118 kb on + strand, within CA265_RS03680 at 877.216 kb on - strand at 877.218 kb on - strand at 877.243 kb on + strand at 877.247 kb on - strand at 877.250 kb on - strand at 877.256 kb on + strand at 877.257 kb on - strand at 877.257 kb on - strand at 877.306 kb on + strand, within CA265_RS03685 at 877.341 kb on + strand, within CA265_RS03685 at 877.373 kb on - strand, within CA265_RS03685 at 877.467 kb on - strand, within CA265_RS03685 at 877.471 kb on + strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.472 kb on - strand, within CA265_RS03685 at 877.508 kb on + strand, within CA265_RS03685 at 877.518 kb on + strand, within CA265_RS03685 at 877.656 kb on + strand, within CA265_RS03685 at 877.657 kb on - strand, within CA265_RS03685 at 877.669 kb on - strand, within CA265_RS03685 at 877.736 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.801 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.803 kb on - strand, within CA265_RS03685 at 877.829 kb on + strand, within CA265_RS03685 at 877.830 kb on - strand, within CA265_RS03685 at 877.873 kb on + strand, within CA265_RS03685 at 877.922 kb on - strand at 877.974 kb on + strand at 877.980 kb on - strand at 877.999 kb on + strand at 877.999 kb on + strand at 878.020 kb on + strand at 878.021 kb on - strand at 878.048 kb on + strand at 878.101 kb on + strand at 878.150 kb on + strand, within CA265_RS03690 at 878.151 kb on - strand, within CA265_RS03690 at 878.162 kb on + strand, within CA265_RS03690 at 878.294 kb on + strand, within CA265_RS03690 at 878.295 kb on - strand, within CA265_RS03690 at 878.304 kb on - strand, within CA265_RS03690 at 878.351 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.358 kb on + strand, within CA265_RS03690 at 878.359 kb on - strand, within CA265_RS03690 at 878.359 kb on - strand, within CA265_RS03690 at 878.391 kb on - strand, within CA265_RS03690 at 878.407 kb on + strand, within CA265_RS03690 at 878.408 kb on - strand, within CA265_RS03690 at 878.481 kb on + strand, within CA265_RS03690 at 878.481 kb on + strand, within CA265_RS03690 at 878.482 kb on - strand, within CA265_RS03690 at 878.482 kb on - strand, within CA265_RS03690 at 878.541 kb on - strand, within CA265_RS03690 at 878.646 kb on + strand, within CA265_RS03690 at 878.647 kb on - strand, within CA265_RS03690 at 878.650 kb on - strand, within CA265_RS03690 at 878.789 kb on - strand, within CA265_RS03690 at 878.824 kb on + strand, within CA265_RS03690 at 878.825 kb on - strand, within CA265_RS03690 at 878.858 kb on + strand, within CA265_RS03690 at 878.859 kb on - strand, within CA265_RS03690 at 878.859 kb on - strand, within CA265_RS03690
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol% remove 876,304 + CA265_RS03675 0.40 -0.0 876,304 + CA265_RS03675 0.40 +0.1 876,305 - CA265_RS03675 0.40 -1.6 876,333 + CA265_RS03675 0.44 -0.0 876,500 + CA265_RS03675 0.70 -0.7 876,538 + CA265_RS03675 0.76 +0.1 876,607 + CA265_RS03675 0.86 -0.4 876,694 - +0.8 876,711 + +0.1 876,711 + -0.7 876,723 - -0.3 876,755 + CA265_RS03680 0.13 +0.2 876,854 - CA265_RS03680 0.31 -0.5 876,854 - CA265_RS03680 0.31 -0.5 876,933 + CA265_RS03680 0.46 -0.2 876,933 + CA265_RS03680 0.46 +0.2 876,933 + CA265_RS03680 0.46 -0.3 876,934 - CA265_RS03680 0.46 -1.3 876,971 + CA265_RS03680 0.53 -0.6 876,972 - CA265_RS03680 0.53 -0.4 876,982 + CA265_RS03680 0.55 +0.0 876,982 + CA265_RS03680 0.55 +0.2 877,015 - CA265_RS03680 0.61 -0.6 877,086 + CA265_RS03680 0.74 -0.7 877,099 - CA265_RS03680 0.76 +0.2 877,116 + CA265_RS03680 0.79 -1.4 877,118 + CA265_RS03680 0.80 +0.6 877,216 - -0.8 877,218 - -0.1 877,243 + +0.1 877,247 - -0.3 877,250 - -1.0 877,256 + +0.4 877,257 - +0.4 877,257 - +0.0 877,306 + CA265_RS03685 0.10 -0.6 877,341 + CA265_RS03685 0.15 -0.8 877,373 - CA265_RS03685 0.20 +0.2 877,467 - CA265_RS03685 0.32 -0.4 877,471 + CA265_RS03685 0.33 -1.3 877,472 - CA265_RS03685 0.33 -0.3 877,472 - CA265_RS03685 0.33 -0.9 877,472 - CA265_RS03685 0.33 -0.3 877,508 + CA265_RS03685 0.38 -0.0 877,518 + CA265_RS03685 0.39 -0.6 877,656 + CA265_RS03685 0.58 +0.3 877,657 - CA265_RS03685 0.58 -1.2 877,669 - CA265_RS03685 0.60 +0.0 877,736 - CA265_RS03685 0.69 +0.7 877,801 - CA265_RS03685 0.78 -0.3 877,801 - CA265_RS03685 0.78 +0.2 877,803 - CA265_RS03685 0.78 -0.3 877,803 - CA265_RS03685 0.78 +0.6 877,803 - CA265_RS03685 0.78 +1.6 877,829 + CA265_RS03685 0.82 -1.4 877,830 - CA265_RS03685 0.82 -2.0 877,873 + CA265_RS03685 0.88 +0.0 877,922 - +0.1 877,974 + +0.1 877,980 - -0.7 877,999 + -0.9 877,999 + -0.8 878,020 + -1.1 878,021 - -1.4 878,048 + -1.3 878,101 + -1.4 878,150 + CA265_RS03690 0.11 -2.0 878,151 - CA265_RS03690 0.11 -0.7 878,162 + CA265_RS03690 0.12 -1.3 878,294 + CA265_RS03690 0.21 -1.4 878,295 - CA265_RS03690 0.21 -0.3 878,304 - CA265_RS03690 0.22 -1.1 878,351 + CA265_RS03690 0.25 +0.6 878,358 + CA265_RS03690 0.26 -1.2 878,358 + CA265_RS03690 0.26 -0.4 878,358 + CA265_RS03690 0.26 -0.9 878,359 - CA265_RS03690 0.26 -0.9 878,359 - CA265_RS03690 0.26 +0.3 878,391 - CA265_RS03690 0.28 -1.6 878,407 + CA265_RS03690 0.29 -0.3 878,408 - CA265_RS03690 0.29 -1.2 878,481 + CA265_RS03690 0.34 -0.6 878,481 + CA265_RS03690 0.34 +0.3 878,482 - CA265_RS03690 0.34 -0.9 878,482 - CA265_RS03690 0.34 -1.5 878,541 - CA265_RS03690 0.38 -0.1 878,646 + CA265_RS03690 0.45 -0.0 878,647 - CA265_RS03690 0.45 -1.1 878,650 - CA265_RS03690 0.46 +2.2 878,789 - CA265_RS03690 0.55 -2.6 878,824 + CA265_RS03690 0.57 -0.9 878,825 - CA265_RS03690 0.58 -2.5 878,858 + CA265_RS03690 0.60 +0.3 878,859 - CA265_RS03690 0.60 -0.6 878,859 - CA265_RS03690 0.60 +0.1
Or see this region's nucleotide sequence