Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03655

Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03645 and CA265_RS03650 are separated by 70 nucleotidesCA265_RS03650 and CA265_RS03655 are separated by 68 nucleotidesCA265_RS03655 and CA265_RS03660 are separated by 29 nucleotides CA265_RS03645: CA265_RS03645 - L,D-transpeptidase, at 870,738 to 872,300 _RS03645 CA265_RS03650: CA265_RS03650 - NUDIX hydrolase, at 872,371 to 873,063 _RS03650 CA265_RS03655: CA265_RS03655 - phosphoribosylpyrophosphate synthetase, at 873,132 to 873,965 _RS03655 CA265_RS03660: CA265_RS03660 - hypothetical protein, at 873,995 to 875,047 _RS03660 Position (kb) 873 874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 872.139 kb on - strand, within CA265_RS03645at 872.202 kb on + strandat 872.203 kb on - strandat 872.203 kb on - strandat 872.356 kb on + strandat 872.356 kb on + strandat 872.441 kb on + strand, within CA265_RS03650at 872.472 kb on - strand, within CA265_RS03650at 872.490 kb on - strand, within CA265_RS03650at 872.534 kb on + strand, within CA265_RS03650at 872.607 kb on + strand, within CA265_RS03650at 872.608 kb on - strand, within CA265_RS03650at 872.648 kb on - strand, within CA265_RS03650at 872.660 kb on + strand, within CA265_RS03650at 872.754 kb on + strand, within CA265_RS03650at 872.826 kb on - strand, within CA265_RS03650at 872.867 kb on - strand, within CA265_RS03650at 872.950 kb on - strand, within CA265_RS03650at 873.013 kb on + strandat 873.137 kb on - strandat 873.222 kb on - strand, within CA265_RS03655at 873.261 kb on - strand, within CA265_RS03655at 873.309 kb on - strand, within CA265_RS03655at 873.311 kb on + strand, within CA265_RS03655at 873.312 kb on - strand, within CA265_RS03655at 873.312 kb on - strand, within CA265_RS03655at 873.359 kb on + strand, within CA265_RS03655at 873.366 kb on + strand, within CA265_RS03655at 873.438 kb on - strand, within CA265_RS03655at 873.441 kb on - strand, within CA265_RS03655at 873.522 kb on - strand, within CA265_RS03655at 873.553 kb on + strand, within CA265_RS03655at 873.584 kb on + strand, within CA265_RS03655at 873.584 kb on + strand, within CA265_RS03655at 873.587 kb on - strand, within CA265_RS03655at 873.656 kb on - strand, within CA265_RS03655at 873.656 kb on - strand, within CA265_RS03655at 873.710 kb on - strand, within CA265_RS03655at 873.710 kb on - strand, within CA265_RS03655at 873.710 kb on - strand, within CA265_RS03655at 873.710 kb on - strand, within CA265_RS03655at 873.749 kb on - strand, within CA265_RS03655at 873.755 kb on + strand, within CA265_RS03655at 873.826 kb on - strand, within CA265_RS03655at 873.829 kb on + strand, within CA265_RS03655at 873.829 kb on + strand, within CA265_RS03655at 873.830 kb on - strand, within CA265_RS03655at 873.899 kb on + strandat 873.943 kb on + strandat 873.969 kb on + strandat 873.974 kb on - strandat 873.982 kb on + strandat 873.983 kb on - strandat 874.033 kb on - strandat 874.083 kb on - strandat 874.109 kb on - strand, within CA265_RS03660at 874.197 kb on - strand, within CA265_RS03660at 874.217 kb on - strand, within CA265_RS03660at 874.218 kb on + strand, within CA265_RS03660at 874.219 kb on - strand, within CA265_RS03660at 874.219 kb on - strand, within CA265_RS03660at 874.275 kb on + strand, within CA265_RS03660at 874.275 kb on + strand, within CA265_RS03660at 874.276 kb on - strand, within CA265_RS03660at 874.341 kb on + strand, within CA265_RS03660at 874.405 kb on - strand, within CA265_RS03660at 874.409 kb on + strand, within CA265_RS03660at 874.421 kb on - strand, within CA265_RS03660at 874.437 kb on - strand, within CA265_RS03660at 874.439 kb on - strand, within CA265_RS03660at 874.471 kb on + strand, within CA265_RS03660at 874.508 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.512 kb on - strand, within CA265_RS03660at 874.549 kb on + strand, within CA265_RS03660at 874.571 kb on - strand, within CA265_RS03660at 874.658 kb on - strand, within CA265_RS03660at 874.659 kb on + strand, within CA265_RS03660at 874.685 kb on + strand, within CA265_RS03660at 874.705 kb on - strand, within CA265_RS03660at 874.725 kb on + strand, within CA265_RS03660at 874.726 kb on - strand, within CA265_RS03660at 874.752 kb on - strand, within CA265_RS03660at 874.767 kb on + strand, within CA265_RS03660at 874.792 kb on + strand, within CA265_RS03660at 874.798 kb on + strand, within CA265_RS03660at 874.824 kb on + strand, within CA265_RS03660at 874.852 kb on + strand, within CA265_RS03660at 874.853 kb on - strand, within CA265_RS03660at 874.853 kb on - strand, within CA265_RS03660at 874.855 kb on - strand, within CA265_RS03660at 874.878 kb on + strand, within CA265_RS03660at 874.879 kb on - strand, within CA265_RS03660at 874.881 kb on + strand, within CA265_RS03660at 874.882 kb on - strand, within CA265_RS03660at 874.910 kb on - strand, within CA265_RS03660at 874.929 kb on - strand, within CA265_RS03660at 874.947 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol%
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872,139 - CA265_RS03645 0.90 -1.4
872,202 + +0.8
872,203 - +0.1
872,203 - -0.2
872,356 + +0.5
872,356 + -0.5
872,441 + CA265_RS03650 0.10 -0.9
872,472 - CA265_RS03650 0.15 -0.6
872,490 - CA265_RS03650 0.17 +0.2
872,534 + CA265_RS03650 0.24 -0.2
872,607 + CA265_RS03650 0.34 +0.0
872,608 - CA265_RS03650 0.34 -0.4
872,648 - CA265_RS03650 0.40 -0.3
872,660 + CA265_RS03650 0.42 -0.4
872,754 + CA265_RS03650 0.55 -0.4
872,826 - CA265_RS03650 0.66 +0.0
872,867 - CA265_RS03650 0.72 +0.1
872,950 - CA265_RS03650 0.84 -0.3
873,013 + +0.0
873,137 - -0.0
873,222 - CA265_RS03655 0.11 -4.0
873,261 - CA265_RS03655 0.15 +0.7
873,309 - CA265_RS03655 0.21 -1.1
873,311 + CA265_RS03655 0.21 -0.9
873,312 - CA265_RS03655 0.22 -0.6
873,312 - CA265_RS03655 0.22 +1.2
873,359 + CA265_RS03655 0.27 -0.5
873,366 + CA265_RS03655 0.28 -1.0
873,438 - CA265_RS03655 0.37 -0.4
873,441 - CA265_RS03655 0.37 +0.4
873,522 - CA265_RS03655 0.47 -1.1
873,553 + CA265_RS03655 0.50 -1.6
873,584 + CA265_RS03655 0.54 -0.4
873,584 + CA265_RS03655 0.54 -0.4
873,587 - CA265_RS03655 0.55 -0.1
873,656 - CA265_RS03655 0.63 -1.5
873,656 - CA265_RS03655 0.63 -1.1
873,710 - CA265_RS03655 0.69 -1.0
873,710 - CA265_RS03655 0.69 -0.7
873,710 - CA265_RS03655 0.69 -1.0
873,710 - CA265_RS03655 0.69 -0.6
873,749 - CA265_RS03655 0.74 -1.0
873,755 + CA265_RS03655 0.75 -0.5
873,826 - CA265_RS03655 0.83 -0.9
873,829 + CA265_RS03655 0.84 -0.7
873,829 + CA265_RS03655 0.84 +0.2
873,830 - CA265_RS03655 0.84 -1.4
873,899 + -1.5
873,943 + -0.3
873,969 + -0.5
873,974 - +0.0
873,982 + +0.9
873,983 - -0.7
874,033 - -0.1
874,083 - +0.2
874,109 - CA265_RS03660 0.11 +0.5
874,197 - CA265_RS03660 0.19 +0.3
874,217 - CA265_RS03660 0.21 -0.1
874,218 + CA265_RS03660 0.21 +0.3
874,219 - CA265_RS03660 0.21 -0.8
874,219 - CA265_RS03660 0.21 +0.7
874,275 + CA265_RS03660 0.27 +0.4
874,275 + CA265_RS03660 0.27 +0.9
874,276 - CA265_RS03660 0.27 +1.2
874,341 + CA265_RS03660 0.33 -0.3
874,405 - CA265_RS03660 0.39 -1.9
874,409 + CA265_RS03660 0.39 +1.3
874,421 - CA265_RS03660 0.40 +0.0
874,437 - CA265_RS03660 0.42 +1.0
874,439 - CA265_RS03660 0.42 +0.2
874,471 + CA265_RS03660 0.45 +1.1
874,508 - CA265_RS03660 0.49 +1.0
874,512 - CA265_RS03660 0.49 +0.2
874,512 - CA265_RS03660 0.49 -1.0
874,512 - CA265_RS03660 0.49 +0.3
874,549 + CA265_RS03660 0.53 -0.2
874,571 - CA265_RS03660 0.55 +0.9
874,658 - CA265_RS03660 0.63 +0.4
874,659 + CA265_RS03660 0.63 -0.1
874,685 + CA265_RS03660 0.66 +0.6
874,705 - CA265_RS03660 0.67 -0.0
874,725 + CA265_RS03660 0.69 +0.6
874,726 - CA265_RS03660 0.69 +1.2
874,752 - CA265_RS03660 0.72 -0.1
874,767 + CA265_RS03660 0.73 -2.8
874,792 + CA265_RS03660 0.76 +0.0
874,798 + CA265_RS03660 0.76 +0.2
874,824 + CA265_RS03660 0.79 -0.8
874,852 + CA265_RS03660 0.81 -0.6
874,853 - CA265_RS03660 0.81 +0.6
874,853 - CA265_RS03660 0.81 -0.0
874,855 - CA265_RS03660 0.82 -0.8
874,878 + CA265_RS03660 0.84 +0.1
874,879 - CA265_RS03660 0.84 -0.4
874,881 + CA265_RS03660 0.84 +1.0
874,882 - CA265_RS03660 0.84 +0.2
874,910 - CA265_RS03660 0.87 -0.2
874,929 - CA265_RS03660 0.89 +0.6
874,947 - +0.6

Or see this region's nucleotide sequence