Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01050 and CA265_RS01055 are separated by 179 nucleotides CA265_RS01055 and CA265_RS01060 are separated by 273 nucleotides
CA265_RS01050: CA265_RS01050 - sodium:solute symporter, at 267,835 to 269,529
_RS01050
CA265_RS01055: CA265_RS01055 - hypothetical protein, at 269,709 to 270,227
_RS01055
CA265_RS01060: CA265_RS01060 - alpha-mannosidase, at 270,501 to 272,585
_RS01060
Position (kb) 269
270
271 Strain fitness (log2 ratio) -1
0
1 at 268.821 kb on + strand, within CA265_RS01050 at 268.821 kb on + strand, within CA265_RS01050 at 268.821 kb on + strand, within CA265_RS01050 at 268.826 kb on + strand, within CA265_RS01050 at 268.893 kb on - strand, within CA265_RS01050 at 268.914 kb on + strand, within CA265_RS01050 at 268.981 kb on + strand, within CA265_RS01050 at 268.981 kb on + strand, within CA265_RS01050 at 268.984 kb on - strand, within CA265_RS01050 at 269.008 kb on + strand, within CA265_RS01050 at 269.011 kb on - strand, within CA265_RS01050 at 269.034 kb on + strand, within CA265_RS01050 at 269.035 kb on - strand, within CA265_RS01050 at 269.145 kb on - strand, within CA265_RS01050 at 269.145 kb on - strand, within CA265_RS01050 at 269.157 kb on + strand, within CA265_RS01050 at 269.289 kb on - strand, within CA265_RS01050 at 269.370 kb on - strand at 269.414 kb on - strand at 269.469 kb on - strand at 269.473 kb on - strand at 269.503 kb on - strand at 269.535 kb on - strand at 269.581 kb on - strand at 269.597 kb on - strand at 269.638 kb on + strand at 269.656 kb on - strand at 269.700 kb on + strand at 269.701 kb on - strand at 269.708 kb on + strand at 269.723 kb on + strand at 269.753 kb on + strand at 269.844 kb on - strand, within CA265_RS01055 at 269.853 kb on + strand, within CA265_RS01055 at 269.854 kb on - strand, within CA265_RS01055 at 269.909 kb on + strand, within CA265_RS01055 at 270.133 kb on + strand, within CA265_RS01055 at 270.218 kb on + strand at 270.218 kb on + strand at 270.221 kb on + strand at 270.222 kb on - strand at 270.234 kb on - strand at 270.303 kb on - strand at 270.369 kb on + strand at 270.371 kb on + strand at 270.379 kb on + strand at 270.451 kb on + strand at 270.499 kb on + strand at 270.499 kb on + strand at 270.557 kb on - strand at 270.587 kb on + strand at 270.888 kb on + strand, within CA265_RS01060 at 270.888 kb on + strand, within CA265_RS01060 at 270.932 kb on - strand, within CA265_RS01060 at 270.957 kb on + strand, within CA265_RS01060 at 271.043 kb on - strand, within CA265_RS01060 at 271.049 kb on + strand, within CA265_RS01060 at 271.050 kb on - strand, within CA265_RS01060 at 271.102 kb on - strand, within CA265_RS01060 at 271.114 kb on - strand, within CA265_RS01060 at 271.117 kb on - strand, within CA265_RS01060 at 271.171 kb on + strand, within CA265_RS01060
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol% remove 268,821 + CA265_RS01050 0.58 -0.2 268,821 + CA265_RS01050 0.58 +1.1 268,821 + CA265_RS01050 0.58 -0.1 268,826 + CA265_RS01050 0.58 -0.1 268,893 - CA265_RS01050 0.62 +0.3 268,914 + CA265_RS01050 0.64 -0.2 268,981 + CA265_RS01050 0.68 -0.7 268,981 + CA265_RS01050 0.68 -0.6 268,984 - CA265_RS01050 0.68 +0.7 269,008 + CA265_RS01050 0.69 -0.9 269,011 - CA265_RS01050 0.69 +1.0 269,034 + CA265_RS01050 0.71 -0.6 269,035 - CA265_RS01050 0.71 +0.2 269,145 - CA265_RS01050 0.77 +0.8 269,145 - CA265_RS01050 0.77 +0.1 269,157 + CA265_RS01050 0.78 +0.5 269,289 - CA265_RS01050 0.86 +0.2 269,370 - +0.2 269,414 - +0.2 269,469 - +0.1 269,473 - +0.6 269,503 - -0.3 269,535 - -1.0 269,581 - -0.3 269,597 - +0.1 269,638 + -0.1 269,656 - +1.1 269,700 + -0.1 269,701 - -0.2 269,708 + -0.5 269,723 + -0.6 269,753 + -0.3 269,844 - CA265_RS01055 0.26 -0.9 269,853 + CA265_RS01055 0.28 -0.0 269,854 - CA265_RS01055 0.28 -1.0 269,909 + CA265_RS01055 0.39 +0.7 270,133 + CA265_RS01055 0.82 -0.4 270,218 + +0.0 270,218 + +0.8 270,221 + +0.0 270,222 - +0.1 270,234 - +0.1 270,303 - +0.3 270,369 + +1.4 270,371 + -0.3 270,379 + +0.0 270,451 + -0.0 270,499 + +0.4 270,499 + -0.2 270,557 - +0.2 270,587 + +0.1 270,888 + CA265_RS01060 0.19 +0.3 270,888 + CA265_RS01060 0.19 +0.6 270,932 - CA265_RS01060 0.21 -0.1 270,957 + CA265_RS01060 0.22 +0.3 271,043 - CA265_RS01060 0.26 -1.0 271,049 + CA265_RS01060 0.26 -1.3 271,050 - CA265_RS01060 0.26 +0.1 271,102 - CA265_RS01060 0.29 +1.2 271,114 - CA265_RS01060 0.29 -0.4 271,117 - CA265_RS01060 0.30 +0.2 271,171 + CA265_RS01060 0.32 +0.5
Or see this region's nucleotide sequence