Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19460

Experiment: CDM1 without Nicotinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS19450 and BBR_RS19455 are separated by 66 nucleotidesBBR_RS19455 and BBR_RS19460 are separated by 22 nucleotidesBBR_RS19460 and BBR_RS19465 are separated by 186 nucleotides BBR_RS19450: BBR_RS19450 - GTPase ObgE, at 2,146,268 to 2,147,959 _RS19450 BBR_RS19455: BBR_RS19455 - 50S ribosomal protein L27, at 2,148,026 to 2,148,277 _RS19455 BBR_RS19460: BBR_RS19460 - 50S ribosomal protein L21, at 2,148,300 to 2,148,608 _RS19460 BBR_RS19465: BBR_RS19465 - ribonuclease E/G, at 2,148,795 to 2,151,857 _RS19465 Position (kb) 2148 2149Strain fitness (log2 ratio) -2 -1 0 1at 2148.017 kb on - strandat 2148.017 kb on - strandat 2148.701 kb on + strandat 2148.723 kb on - strandat 2148.723 kb on - strandat 2148.734 kb on + strandat 2148.764 kb on + strandat 2148.772 kb on - strandat 2148.787 kb on + strandat 2148.787 kb on + strandat 2148.787 kb on + strandat 2148.795 kb on - strandat 2148.800 kb on + strandat 2148.833 kb on + strandat 2148.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Nicotinate
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2,148,017 - +0.5
2,148,017 - +0.2
2,148,701 + -1.9
2,148,723 - +0.1
2,148,723 - +1.2
2,148,734 + -1.7
2,148,764 + -1.5
2,148,772 - +1.2
2,148,787 + -0.0
2,148,787 + -1.5
2,148,787 + -1.5
2,148,795 - -1.0
2,148,800 + -2.3
2,148,833 + -0.6
2,148,889 - +0.7

Or see this region's nucleotide sequence