Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17565

Experiment: CDM1 without Nicotinate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS17560 and BBR_RS17565 are separated by 11 nucleotidesBBR_RS17565 and BBR_RS17570 are separated by 111 nucleotides BBR_RS17560: BBR_RS17560 - inositol monophosphatase family protein, at 1,717,786 to 1,718,682 _RS17560 BBR_RS17565: BBR_RS17565 - proteasome accessory factor PafA2, at 1,718,694 to 1,720,358 _RS17565 BBR_RS17570: BBR_RS17570 - ribulose-phosphate 3-epimerase, at 1,720,470 to 1,721,186 _RS17570 Position (kb) 1718 1719 1720 1721Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1717.722 kb on - strandat 1717.766 kb on + strandat 1717.766 kb on + strandat 1717.766 kb on + strandat 1717.774 kb on - strandat 1717.774 kb on - strandat 1717.774 kb on - strandat 1717.774 kb on - strandat 1717.784 kb on - strandat 1717.808 kb on + strandat 1717.811 kb on - strandat 1717.822 kb on - strandat 1718.719 kb on + strandat 1718.801 kb on + strandat 1718.809 kb on - strandat 1718.814 kb on + strandat 1718.833 kb on + strandat 1718.856 kb on + strandat 1718.867 kb on + strand, within BBR_RS17565at 1718.868 kb on - strand, within BBR_RS17565at 1718.892 kb on - strand, within BBR_RS17565at 1718.893 kb on - strand, within BBR_RS17565at 1718.914 kb on - strand, within BBR_RS17565at 1718.952 kb on - strand, within BBR_RS17565at 1718.954 kb on + strand, within BBR_RS17565at 1719.001 kb on - strand, within BBR_RS17565at 1719.001 kb on - strand, within BBR_RS17565at 1719.003 kb on - strand, within BBR_RS17565at 1719.030 kb on - strand, within BBR_RS17565at 1719.030 kb on - strand, within BBR_RS17565at 1719.044 kb on + strand, within BBR_RS17565at 1719.045 kb on - strand, within BBR_RS17565at 1719.052 kb on - strand, within BBR_RS17565at 1719.052 kb on - strand, within BBR_RS17565at 1719.052 kb on - strand, within BBR_RS17565at 1719.052 kb on - strand, within BBR_RS17565at 1719.076 kb on - strand, within BBR_RS17565at 1719.076 kb on - strand, within BBR_RS17565at 1719.105 kb on + strand, within BBR_RS17565at 1719.110 kb on + strand, within BBR_RS17565at 1719.144 kb on + strand, within BBR_RS17565at 1719.185 kb on + strand, within BBR_RS17565at 1719.203 kb on + strand, within BBR_RS17565at 1719.206 kb on + strand, within BBR_RS17565at 1719.225 kb on + strand, within BBR_RS17565at 1719.292 kb on + strand, within BBR_RS17565at 1719.311 kb on + strand, within BBR_RS17565at 1719.318 kb on - strand, within BBR_RS17565at 1719.338 kb on + strand, within BBR_RS17565at 1719.346 kb on - strand, within BBR_RS17565at 1719.346 kb on - strand, within BBR_RS17565at 1719.363 kb on - strand, within BBR_RS17565at 1719.397 kb on - strand, within BBR_RS17565at 1719.428 kb on - strand, within BBR_RS17565at 1719.430 kb on + strand, within BBR_RS17565at 1719.430 kb on + strand, within BBR_RS17565at 1719.444 kb on - strand, within BBR_RS17565at 1719.454 kb on + strand, within BBR_RS17565at 1719.477 kb on - strand, within BBR_RS17565at 1719.485 kb on - strand, within BBR_RS17565at 1719.487 kb on + strand, within BBR_RS17565at 1719.487 kb on + strand, within BBR_RS17565at 1719.487 kb on + strand, within BBR_RS17565at 1719.488 kb on - strand, within BBR_RS17565at 1719.488 kb on - strand, within BBR_RS17565at 1719.506 kb on + strand, within BBR_RS17565at 1719.533 kb on + strand, within BBR_RS17565at 1719.533 kb on + strand, within BBR_RS17565at 1719.533 kb on + strand, within BBR_RS17565at 1719.541 kb on - strand, within BBR_RS17565at 1719.543 kb on + strand, within BBR_RS17565at 1719.546 kb on - strand, within BBR_RS17565at 1719.551 kb on + strand, within BBR_RS17565at 1719.551 kb on + strand, within BBR_RS17565at 1719.551 kb on - strand, within BBR_RS17565at 1719.561 kb on - strand, within BBR_RS17565at 1719.564 kb on - strand, within BBR_RS17565at 1719.565 kb on + strand, within BBR_RS17565at 1719.567 kb on + strand, within BBR_RS17565at 1719.573 kb on - strand, within BBR_RS17565at 1719.573 kb on - strand, within BBR_RS17565at 1719.586 kb on - strand, within BBR_RS17565at 1719.600 kb on - strand, within BBR_RS17565at 1719.606 kb on + strand, within BBR_RS17565at 1719.709 kb on - strand, within BBR_RS17565at 1719.758 kb on + strand, within BBR_RS17565at 1719.758 kb on + strand, within BBR_RS17565at 1719.766 kb on - strand, within BBR_RS17565at 1719.766 kb on - strand, within BBR_RS17565at 1719.810 kb on + strand, within BBR_RS17565at 1719.842 kb on - strand, within BBR_RS17565at 1719.849 kb on - strand, within BBR_RS17565at 1719.849 kb on - strand, within BBR_RS17565at 1719.860 kb on + strand, within BBR_RS17565at 1719.860 kb on + strand, within BBR_RS17565at 1719.860 kb on + strand, within BBR_RS17565at 1719.868 kb on - strand, within BBR_RS17565at 1719.874 kb on + strand, within BBR_RS17565at 1719.880 kb on - strand, within BBR_RS17565at 1719.880 kb on - strand, within BBR_RS17565at 1719.891 kb on + strand, within BBR_RS17565at 1719.899 kb on - strand, within BBR_RS17565at 1719.899 kb on - strand, within BBR_RS17565at 1719.899 kb on - strand, within BBR_RS17565at 1719.924 kb on - strand, within BBR_RS17565at 1719.960 kb on + strand, within BBR_RS17565at 1719.960 kb on + strand, within BBR_RS17565at 1720.037 kb on + strand, within BBR_RS17565at 1720.070 kb on + strand, within BBR_RS17565at 1720.070 kb on + strand, within BBR_RS17565at 1720.133 kb on + strand, within BBR_RS17565at 1720.148 kb on + strand, within BBR_RS17565at 1720.153 kb on - strand, within BBR_RS17565at 1720.156 kb on - strand, within BBR_RS17565at 1720.179 kb on + strand, within BBR_RS17565at 1720.255 kb on + strandat 1720.255 kb on + strandat 1720.263 kb on - strandat 1720.283 kb on - strandat 1720.283 kb on - strandat 1720.295 kb on - strandat 1720.345 kb on - strandat 1720.355 kb on - strandat 1720.426 kb on + strandat 1720.430 kb on + strandat 1720.438 kb on - strandat 1720.438 kb on - strandat 1720.473 kb on - strandat 1720.480 kb on + strandat 1720.480 kb on + strandat 1720.480 kb on + strandat 1720.482 kb on + strandat 1720.490 kb on - strandat 1720.490 kb on - strandat 1720.490 kb on - strandat 1720.493 kb on - strandat 1720.493 kb on - strandat 1720.523 kb on - strandat 1720.539 kb on - strandat 1720.559 kb on - strand, within BBR_RS17570at 1720.570 kb on + strand, within BBR_RS17570at 1720.588 kb on - strand, within BBR_RS17570at 1720.605 kb on - strand, within BBR_RS17570at 1720.640 kb on + strand, within BBR_RS17570at 1720.674 kb on + strand, within BBR_RS17570at 1720.680 kb on + strand, within BBR_RS17570at 1720.682 kb on - strand, within BBR_RS17570at 1720.682 kb on - strand, within BBR_RS17570at 1720.688 kb on - strand, within BBR_RS17570at 1720.712 kb on - strand, within BBR_RS17570at 1720.714 kb on - strand, within BBR_RS17570at 1720.740 kb on + strand, within BBR_RS17570at 1720.774 kb on + strand, within BBR_RS17570at 1720.793 kb on + strand, within BBR_RS17570at 1720.817 kb on + strand, within BBR_RS17570at 1720.843 kb on + strand, within BBR_RS17570at 1720.849 kb on + strand, within BBR_RS17570at 1720.856 kb on + strand, within BBR_RS17570at 1720.858 kb on - strand, within BBR_RS17570at 1720.858 kb on - strand, within BBR_RS17570at 1720.872 kb on - strand, within BBR_RS17570at 1720.897 kb on + strand, within BBR_RS17570at 1720.905 kb on - strand, within BBR_RS17570at 1720.907 kb on + strand, within BBR_RS17570at 1720.907 kb on + strand, within BBR_RS17570at 1720.915 kb on - strand, within BBR_RS17570at 1720.933 kb on + strand, within BBR_RS17570at 1720.957 kb on + strand, within BBR_RS17570at 1720.957 kb on + strand, within BBR_RS17570at 1720.957 kb on + strand, within BBR_RS17570at 1720.957 kb on + strand, within BBR_RS17570at 1720.965 kb on - strand, within BBR_RS17570at 1720.965 kb on - strand, within BBR_RS17570at 1721.001 kb on - strand, within BBR_RS17570at 1721.011 kb on - strand, within BBR_RS17570at 1721.021 kb on - strand, within BBR_RS17570at 1721.050 kb on + strand, within BBR_RS17570at 1721.055 kb on - strand, within BBR_RS17570at 1721.086 kb on - strand, within BBR_RS17570at 1721.092 kb on + strand, within BBR_RS17570at 1721.100 kb on - strand, within BBR_RS17570at 1721.149 kb on - strandat 1721.159 kb on - strandat 1721.162 kb on - strandat 1721.166 kb on + strandat 1721.226 kb on + strandat 1721.285 kb on + strandat 1721.292 kb on + strandat 1721.292 kb on + strandat 1721.297 kb on + strandat 1721.302 kb on + strandat 1721.302 kb on + strandat 1721.302 kb on + strandat 1721.305 kb on - strandat 1721.319 kb on + strandat 1721.325 kb on - strandat 1721.329 kb on - strandat 1721.329 kb on - strandat 1721.332 kb on + strandat 1721.332 kb on + strandat 1721.332 kb on + strandat 1721.332 kb on + strandat 1721.340 kb on - strandat 1721.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Nicotinate
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1,717,722 - -0.6
1,717,766 + +0.3
1,717,766 + -0.1
1,717,766 + +0.3
1,717,774 - -0.6
1,717,774 - +1.0
1,717,774 - -0.2
1,717,774 - +0.5
1,717,784 - +0.4
1,717,808 + -2.6
1,717,811 - +0.6
1,717,822 - -0.2
1,718,719 + +0.3
1,718,801 + -1.1
1,718,809 - -0.0
1,718,814 + -0.3
1,718,833 + -1.6
1,718,856 + +0.2
1,718,867 + BBR_RS17565 0.10 -0.1
1,718,868 - BBR_RS17565 0.10 +0.3
1,718,892 - BBR_RS17565 0.12 +0.2
1,718,893 - BBR_RS17565 0.12 +0.7
1,718,914 - BBR_RS17565 0.13 +0.7
1,718,952 - BBR_RS17565 0.15 +1.4
1,718,954 + BBR_RS17565 0.16 +0.1
1,719,001 - BBR_RS17565 0.18 -0.3
1,719,001 - BBR_RS17565 0.18 -0.3
1,719,003 - BBR_RS17565 0.19 +1.0
1,719,030 - BBR_RS17565 0.20 +0.4
1,719,030 - BBR_RS17565 0.20 +0.3
1,719,044 + BBR_RS17565 0.21 +0.6
1,719,045 - BBR_RS17565 0.21 +2.0
1,719,052 - BBR_RS17565 0.22 -0.0
1,719,052 - BBR_RS17565 0.22 +0.5
1,719,052 - BBR_RS17565 0.22 +1.2
1,719,052 - BBR_RS17565 0.22 +0.6
1,719,076 - BBR_RS17565 0.23 -1.0
1,719,076 - BBR_RS17565 0.23 -1.1
1,719,105 + BBR_RS17565 0.25 +0.0
1,719,110 + BBR_RS17565 0.25 +0.5
1,719,144 + BBR_RS17565 0.27 -0.8
1,719,185 + BBR_RS17565 0.29 +0.6
1,719,203 + BBR_RS17565 0.31 -0.0
1,719,206 + BBR_RS17565 0.31 -1.6
1,719,225 + BBR_RS17565 0.32 +0.6
1,719,292 + BBR_RS17565 0.36 +1.8
1,719,311 + BBR_RS17565 0.37 +1.4
1,719,318 - BBR_RS17565 0.37 +0.1
1,719,338 + BBR_RS17565 0.39 +1.2
1,719,346 - BBR_RS17565 0.39 +0.4
1,719,346 - BBR_RS17565 0.39 +1.4
1,719,363 - BBR_RS17565 0.40 -0.1
1,719,397 - BBR_RS17565 0.42 -0.1
1,719,428 - BBR_RS17565 0.44 +0.9
1,719,430 + BBR_RS17565 0.44 -0.1
1,719,430 + BBR_RS17565 0.44 -0.4
1,719,444 - BBR_RS17565 0.45 +0.4
1,719,454 + BBR_RS17565 0.46 +0.2
1,719,477 - BBR_RS17565 0.47 -1.0
1,719,485 - BBR_RS17565 0.48 -0.9
1,719,487 + BBR_RS17565 0.48 +0.0
1,719,487 + BBR_RS17565 0.48 -0.3
1,719,487 + BBR_RS17565 0.48 +0.9
1,719,488 - BBR_RS17565 0.48 +0.3
1,719,488 - BBR_RS17565 0.48 +0.5
1,719,506 + BBR_RS17565 0.49 -0.8
1,719,533 + BBR_RS17565 0.50 +0.8
1,719,533 + BBR_RS17565 0.50 -0.1
1,719,533 + BBR_RS17565 0.50 +0.4
1,719,541 - BBR_RS17565 0.51 +1.2
1,719,543 + BBR_RS17565 0.51 -0.2
1,719,546 - BBR_RS17565 0.51 -0.8
1,719,551 + BBR_RS17565 0.51 +0.9
1,719,551 + BBR_RS17565 0.51 +0.3
1,719,551 - BBR_RS17565 0.51 -0.2
1,719,561 - BBR_RS17565 0.52 +0.9
1,719,564 - BBR_RS17565 0.52 +1.1
1,719,565 + BBR_RS17565 0.52 +0.0
1,719,567 + BBR_RS17565 0.52 +0.9
1,719,573 - BBR_RS17565 0.53 +0.4
1,719,573 - BBR_RS17565 0.53 +0.7
1,719,586 - BBR_RS17565 0.54 +0.1
1,719,600 - BBR_RS17565 0.54 -0.0
1,719,606 + BBR_RS17565 0.55 +1.1
1,719,709 - BBR_RS17565 0.61 -0.0
1,719,758 + BBR_RS17565 0.64 +0.4
1,719,758 + BBR_RS17565 0.64 -1.8
1,719,766 - BBR_RS17565 0.64 -2.8
1,719,766 - BBR_RS17565 0.64 +1.7
1,719,810 + BBR_RS17565 0.67 +0.5
1,719,842 - BBR_RS17565 0.69 -0.7
1,719,849 - BBR_RS17565 0.69 -0.1
1,719,849 - BBR_RS17565 0.69 -0.6
1,719,860 + BBR_RS17565 0.70 -0.8
1,719,860 + BBR_RS17565 0.70 +1.4
1,719,860 + BBR_RS17565 0.70 +2.4
1,719,868 - BBR_RS17565 0.71 +0.3
1,719,874 + BBR_RS17565 0.71 -0.1
1,719,880 - BBR_RS17565 0.71 +0.7
1,719,880 - BBR_RS17565 0.71 +0.3
1,719,891 + BBR_RS17565 0.72 -0.4
1,719,899 - BBR_RS17565 0.72 +0.4
1,719,899 - BBR_RS17565 0.72 +1.3
1,719,899 - BBR_RS17565 0.72 -1.4
1,719,924 - BBR_RS17565 0.74 -0.1
1,719,960 + BBR_RS17565 0.76 +1.2
1,719,960 + BBR_RS17565 0.76 +0.6
1,720,037 + BBR_RS17565 0.81 +1.0
1,720,070 + BBR_RS17565 0.83 -2.0
1,720,070 + BBR_RS17565 0.83 +0.3
1,720,133 + BBR_RS17565 0.86 -1.5
1,720,148 + BBR_RS17565 0.87 +0.2
1,720,153 - BBR_RS17565 0.88 +1.2
1,720,156 - BBR_RS17565 0.88 +1.0
1,720,179 + BBR_RS17565 0.89 +0.4
1,720,255 + +0.5
1,720,255 + +1.4
1,720,263 - +0.3
1,720,283 - -0.1
1,720,283 - +0.8
1,720,295 - -0.1
1,720,345 - -0.6
1,720,355 - -1.1
1,720,426 + -0.5
1,720,430 + -0.5
1,720,438 - -0.3
1,720,438 - +0.0
1,720,473 - +0.2
1,720,480 + -0.4
1,720,480 + -0.3
1,720,480 + -0.3
1,720,482 + +1.3
1,720,490 - -0.5
1,720,490 - -0.5
1,720,490 - +0.8
1,720,493 - +0.2
1,720,493 - -0.7
1,720,523 - +1.5
1,720,539 - -0.3
1,720,559 - BBR_RS17570 0.12 +1.5
1,720,570 + BBR_RS17570 0.14 +0.5
1,720,588 - BBR_RS17570 0.16 +2.1
1,720,605 - BBR_RS17570 0.19 -1.8
1,720,640 + BBR_RS17570 0.24 +0.5
1,720,674 + BBR_RS17570 0.28 +0.0
1,720,680 + BBR_RS17570 0.29 -0.6
1,720,682 - BBR_RS17570 0.30 -0.3
1,720,682 - BBR_RS17570 0.30 -0.0
1,720,688 - BBR_RS17570 0.30 +0.1
1,720,712 - BBR_RS17570 0.34 -0.1
1,720,714 - BBR_RS17570 0.34 -0.2
1,720,740 + BBR_RS17570 0.38 +0.1
1,720,774 + BBR_RS17570 0.42 -0.4
1,720,793 + BBR_RS17570 0.45 -0.4
1,720,817 + BBR_RS17570 0.48 -0.8
1,720,843 + BBR_RS17570 0.52 +0.4
1,720,849 + BBR_RS17570 0.53 +0.5
1,720,856 + BBR_RS17570 0.54 +0.5
1,720,858 - BBR_RS17570 0.54 +0.4
1,720,858 - BBR_RS17570 0.54 +0.7
1,720,872 - BBR_RS17570 0.56 -0.6
1,720,897 + BBR_RS17570 0.60 +0.1
1,720,905 - BBR_RS17570 0.61 +1.0
1,720,907 + BBR_RS17570 0.61 +0.3
1,720,907 + BBR_RS17570 0.61 +0.4
1,720,915 - BBR_RS17570 0.62 +1.2
1,720,933 + BBR_RS17570 0.65 +1.2
1,720,957 + BBR_RS17570 0.68 -0.3
1,720,957 + BBR_RS17570 0.68 +0.2
1,720,957 + BBR_RS17570 0.68 -2.5
1,720,957 + BBR_RS17570 0.68 +1.0
1,720,965 - BBR_RS17570 0.69 -2.8
1,720,965 - BBR_RS17570 0.69 -0.5
1,721,001 - BBR_RS17570 0.74 -2.5
1,721,011 - BBR_RS17570 0.75 -0.4
1,721,021 - BBR_RS17570 0.77 -1.9
1,721,050 + BBR_RS17570 0.81 -0.4
1,721,055 - BBR_RS17570 0.82 +0.2
1,721,086 - BBR_RS17570 0.86 +0.9
1,721,092 + BBR_RS17570 0.87 +1.6
1,721,100 - BBR_RS17570 0.88 -0.1
1,721,149 - -1.5
1,721,159 - -0.2
1,721,162 - -1.3
1,721,166 + -0.2
1,721,226 + -0.2
1,721,285 + -0.5
1,721,292 + -0.2
1,721,292 + +0.2
1,721,297 + -0.1
1,721,302 + +0.4
1,721,302 + +0.2
1,721,302 + -2.9
1,721,305 - -0.8
1,721,319 + -0.0
1,721,325 - -0.1
1,721,329 - +1.1
1,721,329 - -0.8
1,721,332 + -1.0
1,721,332 + -0.1
1,721,332 + +0.3
1,721,332 + -0.0
1,721,340 - +0.7
1,721,340 - -1.0

Or see this region's nucleotide sequence