Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4749

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4747 and Ac3H11_4748 are separated by 183 nucleotidesAc3H11_4748 and Ac3H11_4749 are separated by 135 nucleotidesAc3H11_4749 and Ac3H11_4750 are separated by 1 nucleotidesAc3H11_4750 and Ac3H11_4751 overlap by 4 nucleotides Ac3H11_4747 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 49,449 to 50,477 _4747 Ac3H11_4748 - Large-conductance mechanosensitive channel, at 50,661 to 51,092 _4748 Ac3H11_4749 - hypothetical protein, at 51,228 to 51,431 _4749 Ac3H11_4750 - Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2), at 51,433 to 51,843 _4750 Ac3H11_4751 - Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2), at 51,840 to 53,270 _4751 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.476 kb on - strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.507 kb on + strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.508 kb on - strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.528 kb on + strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.529 kb on - strandat 50.658 kb on + strandat 50.659 kb on - strandat 50.659 kb on - strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.662 kb on + strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 50.663 kb on - strandat 51.796 kb on + strand, within Ac3H11_4750at 51.796 kb on + strand, within Ac3H11_4750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
50,476 - -0.1
50,507 + +0.5
50,507 + +1.1
50,507 + +0.6
50,507 + -1.7
50,508 - -1.4
50,508 - -2.0
50,508 - +0.4
50,508 - +0.5
50,508 - +2.2
50,508 - -0.1
50,528 + +0.4
50,528 + +2.8
50,528 + +0.3
50,528 + -0.2
50,528 + -1.1
50,528 + -1.0
50,528 + +0.8
50,528 + +2.4
50,528 + -0.2
50,528 + +0.4
50,528 + -1.4
50,529 - -1.2
50,529 - -0.2
50,529 - -0.4
50,529 - -1.2
50,529 - -1.1
50,529 - +0.5
50,529 - -1.0
50,529 - -1.5
50,529 - -3.3
50,529 - -1.0
50,529 - +0.6
50,529 - +0.3
50,529 - +1.6
50,529 - +0.4
50,529 - +0.5
50,658 + +1.5
50,659 - -1.5
50,659 - -0.9
50,662 + -0.4
50,662 + +0.3
50,662 + +0.6
50,662 + +1.2
50,662 + -2.4
50,662 + -2.1
50,662 + +0.4
50,662 + +0.0
50,662 + +0.2
50,662 + +1.6
50,662 + +0.3
50,662 + -0.2
50,662 + -1.8
50,662 + +1.4
50,663 - -0.7
50,663 - +1.8
50,663 - -2.6
50,663 - -1.5
50,663 - +0.7
50,663 - +0.4
50,663 - -1.5
50,663 - +0.7
50,663 - +2.2
50,663 - +0.1
50,663 - +1.0
51,796 + Ac3H11_4750 0.88 -0.6
51,796 + Ac3H11_4750 0.88 -0.9

Or see this region's nucleotide sequence