Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4738

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4735 and Ac3H11_4736 are separated by 6 nucleotidesAc3H11_4736 and Ac3H11_4737 overlap by 4 nucleotidesAc3H11_4737 and Ac3H11_4738 overlap by 8 nucleotidesAc3H11_4738 and Ac3H11_4739 are separated by 164 nucleotidesAc3H11_4739 and Ac3H11_4740 are separated by 106 nucleotidesAc3H11_4740 and Ac3H11_4741 are separated by 62 nucleotides Ac3H11_4735 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 42,520 to 42,909 _4735 Ac3H11_4736 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 42,916 to 43,290 _4736 Ac3H11_4737 - Probable transmembrane protein, at 43,287 to 43,673 _4737 Ac3H11_4738 - Ferredoxin reductase, at 43,666 to 44,715 _4738 Ac3H11_4739 - FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 44,880 to 45,236 _4739 Ac3H11_4740 - Twin-arginine translocation protein TatA, at 45,343 to 45,585 _4740 Ac3H11_4741 - Twin-arginine translocation protein TatB, at 45,648 to 46,109 _4741 Position (kb) 43 44 45Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.617 kb on + strand, within Ac3H11_4737at 43.692 kb on + strandat 43.692 kb on + strandat 44.030 kb on - strand, within Ac3H11_4738at 44.049 kb on + strand, within Ac3H11_4738at 44.129 kb on + strand, within Ac3H11_4738at 44.278 kb on + strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.294 kb on - strand, within Ac3H11_4738at 44.326 kb on + strand, within Ac3H11_4738at 44.326 kb on + strand, within Ac3H11_4738at 44.327 kb on - strand, within Ac3H11_4738at 44.327 kb on - strand, within Ac3H11_4738at 44.518 kb on + strand, within Ac3H11_4738at 44.851 kb on - strandat 44.851 kb on - strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.857 kb on + strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.858 kb on - strandat 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.943 kb on + strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 44.944 kb on - strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.023 kb on + strand, within Ac3H11_4739at 45.024 kb on - strand, within Ac3H11_4739at 45.151 kb on + strand, within Ac3H11_4739at 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strandat 45.260 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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42,901 + +0.3
42,901 + +0.2
42,901 + -0.5
42,901 + -2.2
42,901 + +1.4
42,901 + -0.6
42,901 + +0.2
42,901 + -0.3
42,907 + +0.8
42,907 + -2.2
42,907 + -0.4
42,907 + +0.2
42,907 + -0.2
43,359 + Ac3H11_4737 0.19 -0.6
43,359 + Ac3H11_4737 0.19 -0.9
43,359 + Ac3H11_4737 0.19 -1.6
43,359 + Ac3H11_4737 0.19 +0.2
43,359 + Ac3H11_4737 0.19 -1.4
43,359 + Ac3H11_4737 0.19 -1.9
43,359 + Ac3H11_4737 0.19 -1.1
43,359 + Ac3H11_4737 0.19 -0.6
43,359 + Ac3H11_4737 0.19 -0.4
43,359 + Ac3H11_4737 0.19 -0.5
43,359 + Ac3H11_4737 0.19 +0.8
43,359 + Ac3H11_4737 0.19 -0.3
43,359 + Ac3H11_4737 0.19 -1.7
43,359 + Ac3H11_4737 0.19 +0.4
43,359 + Ac3H11_4737 0.19 -1.7
43,359 + Ac3H11_4737 0.19 -1.2
43,359 + Ac3H11_4737 0.19 -2.5
43,359 + Ac3H11_4737 0.19 -1.0
43,359 + Ac3H11_4737 0.19 -1.0
43,360 - Ac3H11_4737 0.19 -2.6
43,360 - Ac3H11_4737 0.19 +0.2
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 -3.2
43,360 - Ac3H11_4737 0.19 -1.8
43,360 - Ac3H11_4737 0.19 +0.3
43,360 - Ac3H11_4737 0.19 -1.7
43,360 - Ac3H11_4737 0.19 +0.3
43,360 - Ac3H11_4737 0.19 -0.3
43,360 - Ac3H11_4737 0.19 -1.2
43,360 - Ac3H11_4737 0.19 -1.1
43,360 - Ac3H11_4737 0.19 -0.4
43,360 - Ac3H11_4737 0.19 +1.7
43,360 - Ac3H11_4737 0.19 -1.8
43,360 - Ac3H11_4737 0.19 -1.2
43,360 - Ac3H11_4737 0.19 -1.2
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 -0.3
43,360 - Ac3H11_4737 0.19 -0.8
43,536 + Ac3H11_4737 0.64 -0.4
43,536 + Ac3H11_4737 0.64 +0.6
43,536 + Ac3H11_4737 0.64 +0.2
43,536 + Ac3H11_4737 0.64 -2.1
43,536 + Ac3H11_4737 0.64 -1.3
43,536 + Ac3H11_4737 0.64 -1.5
43,536 + Ac3H11_4737 0.64 -0.7
43,536 + Ac3H11_4737 0.64 -0.2
43,536 + Ac3H11_4737 0.64 -0.1
43,536 + Ac3H11_4737 0.64 -2.4
43,536 + Ac3H11_4737 0.64 -0.9
43,536 + Ac3H11_4737 0.64 -0.6
43,536 + Ac3H11_4737 0.64 -0.2
43,536 + Ac3H11_4737 0.64 +0.8
43,536 + Ac3H11_4737 0.64 +0.9
43,536 + Ac3H11_4737 0.64 -1.2
43,536 + Ac3H11_4737 0.64 -3.5
43,536 + Ac3H11_4737 0.64 -1.5
43,537 - Ac3H11_4737 0.65 -0.6
43,537 - Ac3H11_4737 0.65 -2.1
43,537 - Ac3H11_4737 0.65 -2.6
43,537 - Ac3H11_4737 0.65 +0.3
43,537 - Ac3H11_4737 0.65 -1.8
43,537 - Ac3H11_4737 0.65 +0.6
43,537 - Ac3H11_4737 0.65 -0.0
43,537 - Ac3H11_4737 0.65 -0.8
43,537 - Ac3H11_4737 0.65 -0.9
43,537 - Ac3H11_4737 0.65 -1.3
43,537 - Ac3H11_4737 0.65 +0.3
43,617 + Ac3H11_4737 0.85 -1.1
43,692 + -4.2
43,692 + +0.2
44,030 - Ac3H11_4738 0.35 -0.7
44,049 + Ac3H11_4738 0.36 -1.8
44,129 + Ac3H11_4738 0.44 +0.6
44,278 + Ac3H11_4738 0.58 +1.0
44,294 - Ac3H11_4738 0.60 +4.1
44,294 - Ac3H11_4738 0.60 +0.4
44,294 - Ac3H11_4738 0.60 +2.1
44,326 + Ac3H11_4738 0.63 -1.1
44,326 + Ac3H11_4738 0.63 -1.4
44,327 - Ac3H11_4738 0.63 +0.1
44,327 - Ac3H11_4738 0.63 -0.2
44,518 + Ac3H11_4738 0.81 +0.4
44,851 - -0.2
44,851 - -1.0
44,857 + +0.1
44,857 + -0.7
44,857 + +1.8
44,857 + -2.5
44,857 + -1.6
44,857 + -1.4
44,858 - -0.9
44,858 - -2.8
44,858 - +0.3
44,858 - -0.8
44,943 + Ac3H11_4739 0.18 +0.4
44,943 + Ac3H11_4739 0.18 -2.3
44,943 + Ac3H11_4739 0.18 -0.1
44,943 + Ac3H11_4739 0.18 +0.2
44,943 + Ac3H11_4739 0.18 -0.2
44,943 + Ac3H11_4739 0.18 +1.5
44,943 + Ac3H11_4739 0.18 +0.8
44,943 + Ac3H11_4739 0.18 +1.7
44,943 + Ac3H11_4739 0.18 -1.5
44,944 - Ac3H11_4739 0.18 +0.8
44,944 - Ac3H11_4739 0.18 -2.8
44,944 - Ac3H11_4739 0.18 -1.6
44,944 - Ac3H11_4739 0.18 -0.9
44,944 - Ac3H11_4739 0.18 -1.1
44,944 - Ac3H11_4739 0.18 +0.4
44,944 - Ac3H11_4739 0.18 -1.8
44,944 - Ac3H11_4739 0.18 +0.2
44,944 - Ac3H11_4739 0.18 -0.4
45,023 + Ac3H11_4739 0.40 -0.1
45,023 + Ac3H11_4739 0.40 +0.8
45,023 + Ac3H11_4739 0.40 -0.8
45,023 + Ac3H11_4739 0.40 -2.6
45,023 + Ac3H11_4739 0.40 +0.7
45,024 - Ac3H11_4739 0.40 -0.5
45,151 + Ac3H11_4739 0.76 +0.1
45,260 + +0.9
45,260 + +1.1
45,260 + -0.5
45,260 + +1.4
45,260 + -1.2
45,260 + +0.1

Or see this region's nucleotide sequence