Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4381

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4380 and Ac3H11_4381 are separated by 96 nucleotidesAc3H11_4381 and Ac3H11_4382 are separated by 45 nucleotidesAc3H11_4382 and Ac3H11_4383 are separated by 163 nucleotides Ac3H11_4380 - Putative membrane protein, at 175,402 to 176,115 _4380 Ac3H11_4381 - hypothetical protein, at 176,212 to 176,787 _4381 Ac3H11_4382 - hypothetical protein, at 176,833 to 176,976 _4382 Ac3H11_4383 - Single-stranded DNA-binding protein, at 177,140 to 177,697 _4383 Position (kb) 176 177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 175.255 kb on + strandat 175.256 kb on - strandat 175.257 kb on + strandat 175.258 kb on - strandat 175.258 kb on - strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.259 kb on + strandat 175.260 kb on - strandat 175.260 kb on - strandat 175.260 kb on - strandat 175.282 kb on + strandat 175.282 kb on + strandat 175.282 kb on + strandat 175.282 kb on + strandat 175.283 kb on - strandat 175.283 kb on - strandat 175.283 kb on - strandat 175.283 kb on - strandat 175.283 kb on - strandat 175.283 kb on - strandat 175.286 kb on + strandat 175.286 kb on + strandat 175.286 kb on + strandat 175.445 kb on + strandat 175.445 kb on + strandat 175.445 kb on + strandat 175.445 kb on + strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.446 kb on - strandat 175.538 kb on + strand, within Ac3H11_4380at 175.538 kb on + strand, within Ac3H11_4380at 175.539 kb on - strand, within Ac3H11_4380at 175.539 kb on - strand, within Ac3H11_4380at 175.539 kb on - strand, within Ac3H11_4380at 175.539 kb on - strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.820 kb on + strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 175.821 kb on - strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.039 kb on + strand, within Ac3H11_4380at 176.040 kb on - strand, within Ac3H11_4380at 176.040 kb on - strand, within Ac3H11_4380at 176.040 kb on - strand, within Ac3H11_4380at 176.197 kb on + strandat 176.197 kb on + strandat 176.197 kb on + strandat 176.384 kb on + strand, within Ac3H11_4381at 176.384 kb on + strand, within Ac3H11_4381at 176.384 kb on + strand, within Ac3H11_4381at 176.384 kb on + strand, within Ac3H11_4381at 176.384 kb on + strand, within Ac3H11_4381at 176.385 kb on - strand, within Ac3H11_4381at 176.385 kb on - strand, within Ac3H11_4381at 176.420 kb on + strand, within Ac3H11_4381at 176.420 kb on + strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.421 kb on - strand, within Ac3H11_4381at 176.504 kb on + strand, within Ac3H11_4381at 176.504 kb on + strand, within Ac3H11_4381at 176.504 kb on + strand, within Ac3H11_4381at 176.504 kb on + strand, within Ac3H11_4381at 176.504 kb on + strand, within Ac3H11_4381at 176.505 kb on - strand, within Ac3H11_4381at 176.505 kb on - strand, within Ac3H11_4381at 176.505 kb on - strand, within Ac3H11_4381at 176.564 kb on + strand, within Ac3H11_4381at 176.564 kb on + strand, within Ac3H11_4381at 176.564 kb on + strand, within Ac3H11_4381at 176.565 kb on - strand, within Ac3H11_4381at 176.568 kb on - strand, within Ac3H11_4381at 176.568 kb on - strand, within Ac3H11_4381at 176.660 kb on + strand, within Ac3H11_4381at 176.660 kb on + strand, within Ac3H11_4381at 176.661 kb on - strand, within Ac3H11_4381at 176.661 kb on - strand, within Ac3H11_4381at 176.661 kb on - strand, within Ac3H11_4381at 176.661 kb on - strand, within Ac3H11_4381at 176.693 kb on + strand, within Ac3H11_4381at 176.693 kb on + strand, within Ac3H11_4381at 176.693 kb on + strand, within Ac3H11_4381at 176.694 kb on - strand, within Ac3H11_4381at 176.694 kb on - strand, within Ac3H11_4381at 176.694 kb on - strand, within Ac3H11_4381at 176.694 kb on - strand, within Ac3H11_4381at 176.694 kb on - strand, within Ac3H11_4381at 176.744 kb on + strandat 176.744 kb on + strandat 176.814 kb on - strandat 176.901 kb on + strand, within Ac3H11_4382at 176.974 kb on + strandat 176.974 kb on + strandat 176.974 kb on + strandat 176.974 kb on + strandat 176.975 kb on - strandat 177.060 kb on - strandat 177.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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175,255 + +0.4
175,256 - -2.0
175,257 + +0.3
175,258 - +1.7
175,258 - +0.1
175,259 + +0.6
175,259 + -0.5
175,259 + +0.9
175,259 + +0.4
175,259 + +1.4
175,259 + -0.5
175,259 + -0.1
175,259 + -0.0
175,260 - +0.7
175,260 - -1.9
175,260 - +0.4
175,282 + +1.6
175,282 + +2.0
175,282 + -1.2
175,282 + -0.1
175,283 - -1.1
175,283 - -0.5
175,283 - -1.8
175,283 - +0.7
175,283 - -4.1
175,283 - +0.4
175,286 + -0.3
175,286 + +0.4
175,286 + +1.1
175,445 + -2.8
175,445 + +0.6
175,445 + -0.1
175,445 + -0.8
175,446 - -0.9
175,446 - +0.2
175,446 - +0.5
175,446 - -2.8
175,446 - -0.0
175,446 - +0.6
175,446 - -1.3
175,538 + Ac3H11_4380 0.19 -1.4
175,538 + Ac3H11_4380 0.19 +0.9
175,539 - Ac3H11_4380 0.19 +1.0
175,539 - Ac3H11_4380 0.19 +0.1
175,539 - Ac3H11_4380 0.19 -3.5
175,539 - Ac3H11_4380 0.19 +0.3
175,820 + Ac3H11_4380 0.59 -0.8
175,820 + Ac3H11_4380 0.59 -0.2
175,820 + Ac3H11_4380 0.59 +0.7
175,820 + Ac3H11_4380 0.59 +0.7
175,820 + Ac3H11_4380 0.59 +0.6
175,820 + Ac3H11_4380 0.59 +1.4
175,820 + Ac3H11_4380 0.59 -1.0
175,820 + Ac3H11_4380 0.59 -1.1
175,820 + Ac3H11_4380 0.59 +0.3
175,820 + Ac3H11_4380 0.59 -0.7
175,821 - Ac3H11_4380 0.59 +0.4
175,821 - Ac3H11_4380 0.59 +0.2
175,821 - Ac3H11_4380 0.59 +0.8
175,821 - Ac3H11_4380 0.59 +0.3
175,821 - Ac3H11_4380 0.59 +0.2
175,821 - Ac3H11_4380 0.59 +0.0
175,821 - Ac3H11_4380 0.59 -2.9
175,821 - Ac3H11_4380 0.59 +1.2
175,821 - Ac3H11_4380 0.59 +0.2
176,039 + Ac3H11_4380 0.89 -1.4
176,039 + Ac3H11_4380 0.89 +0.6
176,039 + Ac3H11_4380 0.89 -0.0
176,039 + Ac3H11_4380 0.89 +0.4
176,039 + Ac3H11_4380 0.89 -2.1
176,039 + Ac3H11_4380 0.89 +0.9
176,039 + Ac3H11_4380 0.89 -2.3
176,040 - Ac3H11_4380 0.89 +0.8
176,040 - Ac3H11_4380 0.89 +1.4
176,040 - Ac3H11_4380 0.89 -0.3
176,197 + +1.4
176,197 + +1.7
176,197 + +1.2
176,384 + Ac3H11_4381 0.30 -0.4
176,384 + Ac3H11_4381 0.30 +0.4
176,384 + Ac3H11_4381 0.30 +0.6
176,384 + Ac3H11_4381 0.30 +1.7
176,384 + Ac3H11_4381 0.30 -2.8
176,385 - Ac3H11_4381 0.30 +0.6
176,385 - Ac3H11_4381 0.30 -0.7
176,420 + Ac3H11_4381 0.36 -0.2
176,420 + Ac3H11_4381 0.36 -0.9
176,421 - Ac3H11_4381 0.36 -1.2
176,421 - Ac3H11_4381 0.36 +0.1
176,421 - Ac3H11_4381 0.36 -0.7
176,421 - Ac3H11_4381 0.36 +0.8
176,421 - Ac3H11_4381 0.36 -1.1
176,421 - Ac3H11_4381 0.36 -0.6
176,421 - Ac3H11_4381 0.36 -0.8
176,421 - Ac3H11_4381 0.36 +0.6
176,504 + Ac3H11_4381 0.51 -0.1
176,504 + Ac3H11_4381 0.51 +0.0
176,504 + Ac3H11_4381 0.51 -0.3
176,504 + Ac3H11_4381 0.51 -0.4
176,504 + Ac3H11_4381 0.51 -0.4
176,505 - Ac3H11_4381 0.51 +0.3
176,505 - Ac3H11_4381 0.51 +0.5
176,505 - Ac3H11_4381 0.51 +0.2
176,564 + Ac3H11_4381 0.61 +0.3
176,564 + Ac3H11_4381 0.61 +1.6
176,564 + Ac3H11_4381 0.61 +0.0
176,565 - Ac3H11_4381 0.61 -0.3
176,568 - Ac3H11_4381 0.62 +1.0
176,568 - Ac3H11_4381 0.62 -0.7
176,660 + Ac3H11_4381 0.78 +1.5
176,660 + Ac3H11_4381 0.78 -1.5
176,661 - Ac3H11_4381 0.78 +1.7
176,661 - Ac3H11_4381 0.78 +0.8
176,661 - Ac3H11_4381 0.78 +0.8
176,661 - Ac3H11_4381 0.78 -0.8
176,693 + Ac3H11_4381 0.84 -0.4
176,693 + Ac3H11_4381 0.84 +1.1
176,693 + Ac3H11_4381 0.84 +1.8
176,694 - Ac3H11_4381 0.84 -0.2
176,694 - Ac3H11_4381 0.84 -0.9
176,694 - Ac3H11_4381 0.84 +0.9
176,694 - Ac3H11_4381 0.84 +0.2
176,694 - Ac3H11_4381 0.84 -2.3
176,744 + +0.4
176,744 + -0.4
176,814 - +2.7
176,901 + Ac3H11_4382 0.47 -0.2
176,974 + +0.1
176,974 + +0.1
176,974 + +0.5
176,974 + +0.1
176,975 - -0.7
177,060 - -0.3
177,060 - -0.4

Or see this region's nucleotide sequence