Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4064

Experiment: Zinc 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4063 and Ac3H11_4064 are separated by 850 nucleotidesAc3H11_4064 and Ac3H11_4065 are separated by 345 nucleotides Ac3H11_4063 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 310,515 to 311,162 _4063 Ac3H11_4064 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 312,013 to 313,524 _4064 Ac3H11_4065 - FIG00349255: hypothetical protein, at 313,870 to 314,889 _4065 Position (kb) 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 311.175 kb on + strandat 311.175 kb on + strandat 311.197 kb on + strandat 311.197 kb on + strandat 311.197 kb on + strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.198 kb on - strandat 311.241 kb on + strandat 311.242 kb on - strandat 311.257 kb on + strandat 311.257 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.268 kb on + strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.269 kb on - strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.270 kb on + strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.271 kb on - strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.397 kb on + strandat 311.398 kb on - strandat 311.398 kb on - strandat 311.398 kb on - strandat 311.398 kb on - strandat 311.468 kb on - strandat 311.473 kb on + strandat 311.505 kb on + strandat 311.505 kb on + strandat 311.506 kb on - strandat 311.506 kb on - strandat 311.520 kb on + strandat 311.520 kb on + strandat 311.520 kb on + strandat 311.520 kb on + strandat 311.520 kb on + strandat 311.520 kb on + strandat 311.521 kb on - strandat 311.521 kb on - strandat 311.521 kb on - strandat 311.551 kb on + strandat 311.634 kb on - strandat 311.690 kb on + strandat 311.690 kb on + strandat 311.690 kb on + strandat 311.690 kb on + strandat 311.690 kb on + strandat 311.691 kb on - strandat 311.691 kb on - strandat 311.691 kb on - strandat 311.691 kb on - strandat 311.765 kb on + strandat 311.766 kb on - strandat 311.766 kb on - strandat 311.774 kb on - strandat 311.853 kb on + strandat 311.896 kb on - strandat 311.896 kb on - strandat 311.911 kb on + strandat 311.911 kb on + strandat 311.912 kb on - strandat 311.982 kb on + strandat 311.983 kb on - strandat 311.990 kb on + strandat 311.990 kb on + strandat 311.990 kb on + strandat 311.990 kb on + strandat 311.990 kb on + strandat 311.991 kb on - strandat 311.991 kb on - strandat 311.991 kb on - strandat 311.991 kb on - strandat 311.991 kb on - strandat 311.991 kb on - strandat 312.008 kb on + strandat 312.008 kb on + strandat 312.009 kb on - strandat 312.009 kb on - strandat 312.014 kb on + strandat 312.014 kb on + strandat 312.014 kb on + strandat 312.015 kb on - strandat 312.015 kb on - strandat 312.053 kb on + strandat 312.053 kb on + strandat 312.179 kb on + strand, within Ac3H11_4064at 312.179 kb on + strand, within Ac3H11_4064at 312.180 kb on - strand, within Ac3H11_4064at 312.281 kb on + strand, within Ac3H11_4064at 312.282 kb on - strand, within Ac3H11_4064at 312.282 kb on - strand, within Ac3H11_4064at 312.375 kb on - strand, within Ac3H11_4064at 312.375 kb on - strand, within Ac3H11_4064at 312.375 kb on - strand, within Ac3H11_4064at 312.635 kb on + strand, within Ac3H11_4064at 312.636 kb on - strand, within Ac3H11_4064at 312.636 kb on - strand, within Ac3H11_4064at 312.643 kb on + strand, within Ac3H11_4064at 312.643 kb on + strand, within Ac3H11_4064at 312.643 kb on + strand, within Ac3H11_4064at 312.643 kb on + strand, within Ac3H11_4064at 312.644 kb on - strand, within Ac3H11_4064at 312.644 kb on - strand, within Ac3H11_4064at 312.692 kb on + strand, within Ac3H11_4064at 312.692 kb on + strand, within Ac3H11_4064at 312.693 kb on - strand, within Ac3H11_4064at 312.693 kb on - strand, within Ac3H11_4064at 312.829 kb on + strand, within Ac3H11_4064at 312.829 kb on + strand, within Ac3H11_4064at 312.830 kb on - strand, within Ac3H11_4064at 312.830 kb on - strand, within Ac3H11_4064at 312.830 kb on - strand, within Ac3H11_4064at 312.830 kb on - strand, within Ac3H11_4064at 312.900 kb on - strand, within Ac3H11_4064at 312.900 kb on - strand, within Ac3H11_4064at 312.900 kb on - strand, within Ac3H11_4064at 312.900 kb on - strand, within Ac3H11_4064at 312.905 kb on + strand, within Ac3H11_4064at 312.905 kb on + strand, within Ac3H11_4064at 312.905 kb on + strand, within Ac3H11_4064at 312.905 kb on + strand, within Ac3H11_4064at 312.905 kb on + strand, within Ac3H11_4064at 312.906 kb on - strand, within Ac3H11_4064at 312.906 kb on - strand, within Ac3H11_4064at 312.938 kb on + strand, within Ac3H11_4064at 312.938 kb on + strand, within Ac3H11_4064at 312.938 kb on + strand, within Ac3H11_4064at 312.939 kb on - strand, within Ac3H11_4064at 312.983 kb on + strand, within Ac3H11_4064at 312.983 kb on + strand, within Ac3H11_4064at 312.983 kb on + strand, within Ac3H11_4064at 312.983 kb on + strand, within Ac3H11_4064at 312.984 kb on - strand, within Ac3H11_4064at 312.984 kb on - strand, within Ac3H11_4064at 312.984 kb on - strand, within Ac3H11_4064at 312.984 kb on - strand, within Ac3H11_4064at 312.984 kb on - strand, within Ac3H11_4064at 313.001 kb on - strand, within Ac3H11_4064at 313.058 kb on + strand, within Ac3H11_4064at 313.058 kb on + strand, within Ac3H11_4064at 313.058 kb on + strand, within Ac3H11_4064at 313.058 kb on + strand, within Ac3H11_4064at 313.059 kb on - strand, within Ac3H11_4064at 313.059 kb on - strand, within Ac3H11_4064at 313.059 kb on - strand, within Ac3H11_4064at 313.131 kb on - strand, within Ac3H11_4064at 313.131 kb on - strand, within Ac3H11_4064at 313.131 kb on - strand, within Ac3H11_4064at 313.245 kb on - strand, within Ac3H11_4064at 313.245 kb on - strand, within Ac3H11_4064at 313.271 kb on + strand, within Ac3H11_4064at 313.271 kb on + strand, within Ac3H11_4064at 313.271 kb on + strand, within Ac3H11_4064at 313.272 kb on - strand, within Ac3H11_4064at 313.272 kb on - strand, within Ac3H11_4064at 313.329 kb on - strand, within Ac3H11_4064at 313.329 kb on - strand, within Ac3H11_4064at 313.349 kb on + strand, within Ac3H11_4064at 313.349 kb on + strand, within Ac3H11_4064at 313.350 kb on - strand, within Ac3H11_4064at 313.350 kb on - strand, within Ac3H11_4064at 313.350 kb on - strand, within Ac3H11_4064at 313.350 kb on - strand, within Ac3H11_4064at 313.436 kb on + strandat 313.436 kb on + strandat 313.618 kb on + strandat 313.618 kb on + strandat 313.618 kb on + strandat 313.618 kb on + strandat 313.618 kb on + strandat 313.618 kb on + strandat 313.619 kb on - strandat 313.619 kb on - strandat 313.619 kb on - strandat 313.619 kb on - strandat 313.619 kb on - strandat 313.619 kb on - strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.653 kb on + strandat 313.654 kb on - strandat 313.654 kb on - strandat 313.654 kb on - strandat 313.762 kb on + strandat 314.020 kb on + strand, within Ac3H11_4065at 314.020 kb on + strand, within Ac3H11_4065at 314.020 kb on + strand, within Ac3H11_4065at 314.021 kb on - strand, within Ac3H11_4065at 314.102 kb on - strand, within Ac3H11_4065at 314.102 kb on - strand, within Ac3H11_4065at 314.102 kb on - strand, within Ac3H11_4065at 314.311 kb on + strand, within Ac3H11_4065at 314.312 kb on - strand, within Ac3H11_4065at 314.312 kb on - strand, within Ac3H11_4065at 314.312 kb on - strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.407 kb on + strand, within Ac3H11_4065at 314.408 kb on - strand, within Ac3H11_4065at 314.491 kb on + strand, within Ac3H11_4065at 314.491 kb on + strand, within Ac3H11_4065at 314.491 kb on + strand, within Ac3H11_4065at 314.492 kb on - strand, within Ac3H11_4065at 314.492 kb on - strand, within Ac3H11_4065at 314.492 kb on - strand, within Ac3H11_4065at 314.492 kb on - strand, within Ac3H11_4065at 314.492 kb on - strand, within Ac3H11_4065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
remove
311,175 + +0.1
311,175 + +0.2
311,197 + -0.5
311,197 + +0.7
311,197 + +0.7
311,198 - -0.2
311,198 - -1.3
311,198 - -0.2
311,198 - -0.3
311,198 - -0.9
311,241 + -0.1
311,242 - -3.1
311,257 + -0.0
311,257 + +0.9
311,268 + +1.4
311,268 + -0.7
311,268 + -2.4
311,268 + -0.2
311,268 + +1.0
311,268 + -0.3
311,268 + +0.8
311,268 + +0.2
311,269 - -0.3
311,269 - -0.3
311,269 - +1.4
311,269 - +1.1
311,269 - -0.7
311,269 - -0.6
311,270 + +0.2
311,270 + +0.3
311,270 + -1.4
311,270 + -0.1
311,270 + -1.4
311,270 + -0.6
311,270 + -0.1
311,270 + +0.4
311,270 + -0.9
311,271 - +0.4
311,271 - +0.3
311,271 - -1.0
311,271 - -1.3
311,271 - -0.2
311,271 - +0.5
311,271 - +0.6
311,271 - +1.0
311,271 - -0.9
311,271 - -0.1
311,271 - +1.0
311,397 + -2.2
311,397 + +0.1
311,397 + +0.6
311,397 + -0.5
311,397 + +2.0
311,397 + -1.7
311,397 + -0.0
311,397 + -0.9
311,397 + +1.3
311,398 - -0.8
311,398 - -0.1
311,398 - -0.3
311,398 - -1.9
311,468 - +0.6
311,473 + -0.2
311,505 + +0.1
311,505 + -0.1
311,506 - -1.0
311,506 - +1.6
311,520 + -0.7
311,520 + -0.7
311,520 + -0.0
311,520 + +0.1
311,520 + +0.2
311,520 + -0.7
311,521 - +0.2
311,521 - +0.7
311,521 - +0.4
311,551 + +1.3
311,634 - +0.8
311,690 + +0.1
311,690 + +1.9
311,690 + -0.3
311,690 + +0.6
311,690 + -0.0
311,691 - +0.0
311,691 - +0.6
311,691 - -0.2
311,691 - +0.5
311,765 + -1.1
311,766 - +0.5
311,766 - +0.3
311,774 - +0.5
311,853 + -1.6
311,896 - -0.8
311,896 - -1.4
311,911 + -0.3
311,911 + -0.3
311,912 - -0.5
311,982 + -0.7
311,983 - -1.5
311,990 + -1.3
311,990 + +0.1
311,990 + +0.4
311,990 + -2.4
311,990 + -0.0
311,991 - -0.7
311,991 - +0.8
311,991 - -0.8
311,991 - -0.2
311,991 - -0.8
311,991 - -1.0
312,008 + +0.8
312,008 + +0.4
312,009 - -1.1
312,009 - +2.4
312,014 + +0.1
312,014 + -0.4
312,014 + -0.4
312,015 - -2.5
312,015 - -0.4
312,053 + -0.7
312,053 + +0.1
312,179 + Ac3H11_4064 0.11 -0.2
312,179 + Ac3H11_4064 0.11 +0.5
312,180 - Ac3H11_4064 0.11 -1.1
312,281 + Ac3H11_4064 0.18 +0.1
312,282 - Ac3H11_4064 0.18 +0.6
312,282 - Ac3H11_4064 0.18 -0.0
312,375 - Ac3H11_4064 0.24 -0.9
312,375 - Ac3H11_4064 0.24 -0.7
312,375 - Ac3H11_4064 0.24 +0.0
312,635 + Ac3H11_4064 0.41 -1.8
312,636 - Ac3H11_4064 0.41 +1.2
312,636 - Ac3H11_4064 0.41 +0.7
312,643 + Ac3H11_4064 0.42 -0.8
312,643 + Ac3H11_4064 0.42 -0.0
312,643 + Ac3H11_4064 0.42 -0.4
312,643 + Ac3H11_4064 0.42 +0.0
312,644 - Ac3H11_4064 0.42 -2.0
312,644 - Ac3H11_4064 0.42 -1.5
312,692 + Ac3H11_4064 0.45 -1.1
312,692 + Ac3H11_4064 0.45 -1.3
312,693 - Ac3H11_4064 0.45 -1.0
312,693 - Ac3H11_4064 0.45 -0.6
312,829 + Ac3H11_4064 0.54 +0.3
312,829 + Ac3H11_4064 0.54 -0.7
312,830 - Ac3H11_4064 0.54 -2.5
312,830 - Ac3H11_4064 0.54 +0.8
312,830 - Ac3H11_4064 0.54 +1.3
312,830 - Ac3H11_4064 0.54 -2.8
312,900 - Ac3H11_4064 0.59 +0.1
312,900 - Ac3H11_4064 0.59 +1.5
312,900 - Ac3H11_4064 0.59 -0.4
312,900 - Ac3H11_4064 0.59 -1.3
312,905 + Ac3H11_4064 0.59 +0.5
312,905 + Ac3H11_4064 0.59 -3.1
312,905 + Ac3H11_4064 0.59 -0.3
312,905 + Ac3H11_4064 0.59 -2.1
312,905 + Ac3H11_4064 0.59 +0.5
312,906 - Ac3H11_4064 0.59 -0.1
312,906 - Ac3H11_4064 0.59 +0.3
312,938 + Ac3H11_4064 0.61 -3.3
312,938 + Ac3H11_4064 0.61 +0.9
312,938 + Ac3H11_4064 0.61 -0.1
312,939 - Ac3H11_4064 0.61 -0.0
312,983 + Ac3H11_4064 0.64 -0.5
312,983 + Ac3H11_4064 0.64 +0.4
312,983 + Ac3H11_4064 0.64 -0.6
312,983 + Ac3H11_4064 0.64 +1.0
312,984 - Ac3H11_4064 0.64 -0.9
312,984 - Ac3H11_4064 0.64 +0.6
312,984 - Ac3H11_4064 0.64 -0.1
312,984 - Ac3H11_4064 0.64 -0.1
312,984 - Ac3H11_4064 0.64 -0.9
313,001 - Ac3H11_4064 0.65 +0.7
313,058 + Ac3H11_4064 0.69 +0.1
313,058 + Ac3H11_4064 0.69 +0.3
313,058 + Ac3H11_4064 0.69 +1.3
313,058 + Ac3H11_4064 0.69 -0.3
313,059 - Ac3H11_4064 0.69 -0.3
313,059 - Ac3H11_4064 0.69 +1.1
313,059 - Ac3H11_4064 0.69 +0.2
313,131 - Ac3H11_4064 0.74 -0.6
313,131 - Ac3H11_4064 0.74 -0.9
313,131 - Ac3H11_4064 0.74 +0.0
313,245 - Ac3H11_4064 0.81 +0.3
313,245 - Ac3H11_4064 0.81 -0.3
313,271 + Ac3H11_4064 0.83 -0.3
313,271 + Ac3H11_4064 0.83 -0.3
313,271 + Ac3H11_4064 0.83 -2.8
313,272 - Ac3H11_4064 0.83 +1.2
313,272 - Ac3H11_4064 0.83 +1.3
313,329 - Ac3H11_4064 0.87 +1.4
313,329 - Ac3H11_4064 0.87 -2.4
313,349 + Ac3H11_4064 0.88 +0.6
313,349 + Ac3H11_4064 0.88 -0.5
313,350 - Ac3H11_4064 0.88 -0.4
313,350 - Ac3H11_4064 0.88 -0.4
313,350 - Ac3H11_4064 0.88 +0.9
313,350 - Ac3H11_4064 0.88 +1.2
313,436 + -1.3
313,436 + -0.9
313,618 + +1.6
313,618 + -0.8
313,618 + +0.3
313,618 + +0.8
313,618 + -0.4
313,618 + -0.4
313,619 - -0.3
313,619 - -2.4
313,619 - -0.3
313,619 - -0.3
313,619 - +0.9
313,619 - -0.8
313,653 + -1.2
313,653 + +1.0
313,653 + +0.4
313,653 + -0.8
313,653 + -0.5
313,653 + +0.2
313,653 + +0.1
313,654 - +1.3
313,654 - +1.6
313,654 - +0.3
313,762 + -1.1
314,020 + Ac3H11_4065 0.15 -1.9
314,020 + Ac3H11_4065 0.15 +0.4
314,020 + Ac3H11_4065 0.15 +0.6
314,021 - Ac3H11_4065 0.15 -0.7
314,102 - Ac3H11_4065 0.23 -0.5
314,102 - Ac3H11_4065 0.23 -1.3
314,102 - Ac3H11_4065 0.23 +1.2
314,311 + Ac3H11_4065 0.43 -1.1
314,312 - Ac3H11_4065 0.43 +1.7
314,312 - Ac3H11_4065 0.43 -0.1
314,312 - Ac3H11_4065 0.43 +1.3
314,407 + Ac3H11_4065 0.53 -1.1
314,407 + Ac3H11_4065 0.53 -2.0
314,407 + Ac3H11_4065 0.53 -0.8
314,407 + Ac3H11_4065 0.53 -0.8
314,407 + Ac3H11_4065 0.53 -0.4
314,407 + Ac3H11_4065 0.53 -0.0
314,407 + Ac3H11_4065 0.53 +0.5
314,408 - Ac3H11_4065 0.53 +0.5
314,491 + Ac3H11_4065 0.61 +0.2
314,491 + Ac3H11_4065 0.61 +1.2
314,491 + Ac3H11_4065 0.61 +0.0
314,492 - Ac3H11_4065 0.61 +0.4
314,492 - Ac3H11_4065 0.61 -0.2
314,492 - Ac3H11_4065 0.61 -0.2
314,492 - Ac3H11_4065 0.61 -4.0
314,492 - Ac3H11_4065 0.61 -0.4

Or see this region's nucleotide sequence