Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3949

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3948 and Ac3H11_3949 are separated by 15 nucleotidesAc3H11_3949 and Ac3H11_3950 are separated by 133 nucleotides Ac3H11_3948 - Ferrichrome-iron receptor, at 169,796 to 172,105 _3948 Ac3H11_3949 - Outer membrane stress sensor protease DegS, at 172,121 to 173,644 _3949 Ac3H11_3950 - Catalase (EC 1.11.1.6), at 173,778 to 174,767 _3950 Position (kb) 172 173 174Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 171.143 kb on + strand, within Ac3H11_3948at 171.192 kb on - strand, within Ac3H11_3948at 171.317 kb on + strand, within Ac3H11_3948at 171.317 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.326 kb on + strand, within Ac3H11_3948at 171.327 kb on - strand, within Ac3H11_3948at 171.372 kb on - strand, within Ac3H11_3948at 171.372 kb on - strand, within Ac3H11_3948at 171.387 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.440 kb on + strand, within Ac3H11_3948at 171.441 kb on - strand, within Ac3H11_3948at 171.441 kb on - strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.494 kb on + strand, within Ac3H11_3948at 171.495 kb on - strand, within Ac3H11_3948at 171.503 kb on + strand, within Ac3H11_3948at 171.503 kb on + strand, within Ac3H11_3948at 171.504 kb on - strand, within Ac3H11_3948at 171.504 kb on - strand, within Ac3H11_3948at 171.539 kb on + strand, within Ac3H11_3948at 171.539 kb on + strand, within Ac3H11_3948at 171.540 kb on - strand, within Ac3H11_3948at 171.540 kb on - strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.617 kb on + strand, within Ac3H11_3948at 171.756 kb on - strand, within Ac3H11_3948at 171.956 kb on + strandat 171.956 kb on + strandat 171.956 kb on + strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.957 kb on - strandat 171.977 kb on + strandat 172.034 kb on + strandat 172.034 kb on + strandat 172.035 kb on - strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.049 kb on + strandat 172.050 kb on - strandat 172.122 kb on + strandat 172.123 kb on - strandat 172.800 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.818 kb on + strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 172.819 kb on - strand, within Ac3H11_3949at 173.310 kb on + strand, within Ac3H11_3949at 173.650 kb on + strandat 173.650 kb on + strandat 173.651 kb on - strandat 173.651 kb on - strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.652 kb on + strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.653 kb on - strandat 173.701 kb on + strandat 173.712 kb on + strandat 173.813 kb on - strandat 173.965 kb on + strand, within Ac3H11_3950at 173.965 kb on + strand, within Ac3H11_3950at 173.966 kb on - strand, within Ac3H11_3950at 174.529 kb on + strand, within Ac3H11_3950

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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171,143 + Ac3H11_3948 0.58 -1.2
171,192 - Ac3H11_3948 0.60 -0.1
171,317 + Ac3H11_3948 0.66 -1.2
171,317 + Ac3H11_3948 0.66 +0.3
171,326 + Ac3H11_3948 0.66 -2.0
171,326 + Ac3H11_3948 0.66 -0.4
171,326 + Ac3H11_3948 0.66 +1.3
171,327 - Ac3H11_3948 0.66 -0.7
171,372 - Ac3H11_3948 0.68 -2.8
171,372 - Ac3H11_3948 0.68 +1.7
171,387 + Ac3H11_3948 0.69 +0.5
171,440 + Ac3H11_3948 0.71 +1.8
171,440 + Ac3H11_3948 0.71 +1.1
171,440 + Ac3H11_3948 0.71 +0.3
171,441 - Ac3H11_3948 0.71 -1.0
171,441 - Ac3H11_3948 0.71 -1.2
171,494 + Ac3H11_3948 0.74 -0.4
171,494 + Ac3H11_3948 0.74 +0.1
171,494 + Ac3H11_3948 0.74 -1.5
171,495 - Ac3H11_3948 0.74 -0.5
171,503 + Ac3H11_3948 0.74 +0.7
171,503 + Ac3H11_3948 0.74 -2.0
171,504 - Ac3H11_3948 0.74 +2.2
171,504 - Ac3H11_3948 0.74 +0.4
171,539 + Ac3H11_3948 0.75 -0.8
171,539 + Ac3H11_3948 0.75 -1.0
171,540 - Ac3H11_3948 0.75 +0.3
171,540 - Ac3H11_3948 0.75 -2.4
171,617 + Ac3H11_3948 0.79 -2.1
171,617 + Ac3H11_3948 0.79 -0.0
171,617 + Ac3H11_3948 0.79 +0.6
171,617 + Ac3H11_3948 0.79 -0.5
171,756 - Ac3H11_3948 0.85 +0.5
171,956 + -0.4
171,956 + +0.2
171,956 + -1.4
171,957 - -1.7
171,957 - -3.0
171,957 - +1.7
171,957 - -0.0
171,977 + +0.2
172,034 + -0.4
172,034 + -0.7
172,035 - -0.7
172,049 + +1.5
172,049 + -0.6
172,049 + -2.1
172,049 + +0.6
172,050 - +0.7
172,122 + -2.2
172,123 - -0.1
172,800 + Ac3H11_3949 0.45 +0.3
172,818 + Ac3H11_3949 0.46 +0.1
172,818 + Ac3H11_3949 0.46 -0.7
172,818 + Ac3H11_3949 0.46 +0.6
172,818 + Ac3H11_3949 0.46 -1.0
172,818 + Ac3H11_3949 0.46 -0.2
172,819 - Ac3H11_3949 0.46 -0.9
172,819 - Ac3H11_3949 0.46 +0.7
172,819 - Ac3H11_3949 0.46 +0.0
172,819 - Ac3H11_3949 0.46 -0.2
173,310 + Ac3H11_3949 0.78 +0.7
173,650 + -0.7
173,650 + -0.3
173,651 - +0.2
173,651 - -1.0
173,652 + -0.2
173,652 + +0.1
173,652 + -0.1
173,652 + +0.8
173,653 - -0.6
173,653 - -1.1
173,653 - +0.3
173,653 - -1.7
173,653 - +0.3
173,653 - -0.9
173,653 - +1.9
173,653 - -0.2
173,701 + +0.2
173,712 + -2.4
173,813 - +0.3
173,965 + Ac3H11_3950 0.19 +1.1
173,965 + Ac3H11_3950 0.19 +0.1
173,966 - Ac3H11_3950 0.19 +0.4
174,529 + Ac3H11_3950 0.76 +0.3

Or see this region's nucleotide sequence