Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_377

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_375 and Ac3H11_376 are separated by 301 nucleotidesAc3H11_376 and Ac3H11_564 are separated by 16 nucleotidesAc3H11_564 and Ac3H11_377 are separated by 63 nucleotidesAc3H11_377 and Ac3H11_565 are separated by 48 nucleotides Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698 _375 Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272 _376 Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361 _564 Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353 _377 Ac3H11_565 - tRNA-His-GTG, at 54,402 to 54,474 _565 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 51.739 kb on + strandat 51.739 kb on + strandat 51.790 kb on + strandat 51.791 kb on - strandat 51.796 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.889 kb on - strandat 51.889 kb on - strandat 52.191 kb on + strand, within Ac3H11_376at 54.710 kb on + strandat 54.754 kb on + strandat 54.755 kb on - strandat 54.766 kb on + strandat 54.767 kb on - strandat 54.767 kb on - strandat 54.791 kb on - strandat 54.795 kb on + strandat 54.795 kb on + strandat 54.795 kb on + strandat 54.795 kb on + strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.796 kb on - strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.929 kb on + strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.930 kb on - strandat 54.935 kb on + strandat 54.935 kb on + strandat 54.935 kb on + strandat 54.935 kb on + strandat 54.936 kb on - strandat 54.936 kb on - strandat 54.936 kb on - strandat 55.102 kb on + strandat 55.102 kb on + strandat 55.102 kb on + strandat 55.102 kb on + strandat 55.102 kb on + strandat 55.102 kb on + strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.103 kb on - strandat 55.104 kb on + strandat 55.145 kb on + strandat 55.213 kb on + strandat 55.213 kb on + strandat 55.213 kb on + strandat 55.213 kb on + strandat 55.213 kb on + strandat 55.213 kb on + strandat 55.214 kb on - strandat 55.214 kb on - strandat 55.214 kb on - strandat 55.214 kb on - strandat 55.214 kb on - strandat 55.214 kb on - strandat 55.215 kb on + strandat 55.216 kb on - strandat 55.305 kb on + strandat 55.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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51,739 + +1.3
51,739 + -1.1
51,790 + +1.3
51,791 - +3.2
51,796 + +0.3
51,834 + -1.5
51,834 + -1.7
51,834 + +2.3
51,889 - -0.5
51,889 - +0.7
52,191 + Ac3H11_376 0.70 -3.4
54,710 + -0.8
54,754 + -0.1
54,755 - +0.1
54,766 + -0.7
54,767 - +0.6
54,767 - -1.5
54,791 - +0.9
54,795 + +0.3
54,795 + +2.0
54,795 + +0.6
54,795 + +0.1
54,796 - +0.3
54,796 - -1.7
54,796 - -0.9
54,796 - +0.3
54,796 - +0.3
54,796 - -1.3
54,796 - +0.0
54,929 + +0.6
54,929 + +0.2
54,929 + +2.3
54,929 + -0.4
54,929 + -0.4
54,929 + +0.9
54,929 + -2.3
54,929 + -0.5
54,929 + -3.8
54,930 - -0.2
54,930 - +0.6
54,930 - +0.1
54,930 - -0.1
54,930 - +0.0
54,935 + -1.1
54,935 + +1.8
54,935 + -0.3
54,935 + -0.7
54,936 - -2.2
54,936 - +1.3
54,936 - +0.9
55,102 + -0.4
55,102 + +0.5
55,102 + -0.1
55,102 + -0.6
55,102 + -0.0
55,102 + -0.0
55,103 - +0.0
55,103 - +0.9
55,103 - -1.1
55,103 - -1.0
55,103 - +1.0
55,103 - +1.4
55,103 - -0.6
55,103 - +0.4
55,103 - -0.1
55,104 + +0.3
55,145 + -0.2
55,213 + -1.5
55,213 + +0.3
55,213 + +0.7
55,213 + -0.4
55,213 + +0.2
55,213 + -2.7
55,214 - -0.2
55,214 - +1.3
55,214 - -0.9
55,214 - +0.5
55,214 - -1.0
55,214 - +2.3
55,215 + +0.1
55,216 - -1.2
55,305 + -0.5
55,306 - -0.7

Or see this region's nucleotide sequence