Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3361

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3360 and Ac3H11_3361 are separated by 16 nucleotidesAc3H11_3361 and Ac3H11_3362 are separated by 27 nucleotides Ac3H11_3360 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 43,446 to 44,168 _3360 Ac3H11_3361 - Copper sensory histidine kinase CpxA, at 44,185 to 45,468 _3361 Ac3H11_3362 - Transporter, MFS superfamily, at 45,496 to 46,788 _3362 Position (kb) 44 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.187 kb on - strandat 43.187 kb on - strandat 43.187 kb on - strandat 43.298 kb on + strandat 43.299 kb on - strandat 43.300 kb on + strandat 43.347 kb on + strandat 43.418 kb on + strandat 43.418 kb on + strandat 43.418 kb on + strandat 43.418 kb on + strandat 43.418 kb on + strandat 43.418 kb on + strandat 43.419 kb on - strandat 43.434 kb on + strandat 43.434 kb on + strandat 43.434 kb on + strandat 43.434 kb on + strandat 43.434 kb on + strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.435 kb on - strandat 43.506 kb on + strandat 43.507 kb on - strandat 43.507 kb on - strandat 43.764 kb on + strand, within Ac3H11_3360at 43.765 kb on - strand, within Ac3H11_3360at 43.944 kb on + strand, within Ac3H11_3360at 43.944 kb on + strand, within Ac3H11_3360at 44.142 kb on + strandat 44.142 kb on + strandat 44.142 kb on + strandat 44.143 kb on - strandat 44.143 kb on - strandat 44.143 kb on - strandat 44.219 kb on - strandat 44.624 kb on - strand, within Ac3H11_3361at 44.644 kb on - strand, within Ac3H11_3361at 44.990 kb on - strand, within Ac3H11_3361at 45.158 kb on - strand, within Ac3H11_3361at 45.278 kb on - strand, within Ac3H11_3361at 45.539 kb on + strandat 45.539 kb on + strandat 45.539 kb on + strandat 45.539 kb on + strandat 45.539 kb on + strandat 45.539 kb on + strandat 45.540 kb on - strandat 45.540 kb on - strandat 45.540 kb on - strandat 45.587 kb on + strandat 45.740 kb on + strand, within Ac3H11_3362at 45.740 kb on + strand, within Ac3H11_3362at 45.740 kb on + strand, within Ac3H11_3362at 45.740 kb on + strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.741 kb on - strand, within Ac3H11_3362at 45.849 kb on - strand, within Ac3H11_3362at 46.019 kb on + strand, within Ac3H11_3362at 46.019 kb on + strand, within Ac3H11_3362at 46.019 kb on + strand, within Ac3H11_3362at 46.020 kb on - strand, within Ac3H11_3362at 46.020 kb on - strand, within Ac3H11_3362at 46.020 kb on - strand, within Ac3H11_3362at 46.040 kb on + strand, within Ac3H11_3362

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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43,187 - -1.3
43,187 - +2.6
43,187 - -0.2
43,298 + -0.4
43,299 - -0.7
43,300 + +0.8
43,347 + -2.7
43,418 + -2.3
43,418 + +0.5
43,418 + +1.0
43,418 + -1.8
43,418 + +0.3
43,418 + +2.6
43,419 - +0.4
43,434 + -0.1
43,434 + +0.3
43,434 + +0.1
43,434 + +0.1
43,434 + -1.2
43,435 - +0.6
43,435 - -0.7
43,435 - -1.9
43,435 - +0.2
43,435 - -0.8
43,435 - +0.6
43,435 - +0.7
43,506 + -1.6
43,507 - +0.3
43,507 - -0.2
43,764 + Ac3H11_3360 0.44 +0.2
43,765 - Ac3H11_3360 0.44 -0.3
43,944 + Ac3H11_3360 0.69 -0.3
43,944 + Ac3H11_3360 0.69 -1.1
44,142 + +0.0
44,142 + +0.3
44,142 + -0.4
44,143 - +0.3
44,143 - +0.9
44,143 - +1.3
44,219 - -1.0
44,624 - Ac3H11_3361 0.34 -2.6
44,644 - Ac3H11_3361 0.36 -2.2
44,990 - Ac3H11_3361 0.63 -0.8
45,158 - Ac3H11_3361 0.76 -2.9
45,278 - Ac3H11_3361 0.85 -2.0
45,539 + -0.2
45,539 + -1.6
45,539 + -0.4
45,539 + +0.2
45,539 + +0.3
45,539 + -1.7
45,540 - +0.9
45,540 - -1.8
45,540 - -1.4
45,587 + +0.8
45,740 + Ac3H11_3362 0.19 -1.3
45,740 + Ac3H11_3362 0.19 -1.7
45,740 + Ac3H11_3362 0.19 +0.5
45,740 + Ac3H11_3362 0.19 -0.3
45,741 - Ac3H11_3362 0.19 +1.5
45,741 - Ac3H11_3362 0.19 -0.7
45,741 - Ac3H11_3362 0.19 -1.0
45,741 - Ac3H11_3362 0.19 -0.3
45,741 - Ac3H11_3362 0.19 -1.4
45,741 - Ac3H11_3362 0.19 +0.8
45,741 - Ac3H11_3362 0.19 -2.1
45,741 - Ac3H11_3362 0.19 -0.7
45,741 - Ac3H11_3362 0.19 -1.1
45,741 - Ac3H11_3362 0.19 -0.5
45,741 - Ac3H11_3362 0.19 +0.0
45,741 - Ac3H11_3362 0.19 +0.4
45,741 - Ac3H11_3362 0.19 +0.8
45,849 - Ac3H11_3362 0.27 +0.7
46,019 + Ac3H11_3362 0.40 +0.3
46,019 + Ac3H11_3362 0.40 +0.9
46,019 + Ac3H11_3362 0.40 -0.1
46,020 - Ac3H11_3362 0.41 +0.0
46,020 - Ac3H11_3362 0.41 +0.9
46,020 - Ac3H11_3362 0.41 -0.0
46,040 + Ac3H11_3362 0.42 +0.0

Or see this region's nucleotide sequence