Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2751

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2750 and Ac3H11_2751 are separated by 184 nucleotidesAc3H11_2751 and Ac3H11_2752 are separated by 45 nucleotides Ac3H11_2750 - Large subunit naph/bph dioxygenase, at 1,049,355 to 1,050,755 _2750 Ac3H11_2751 - Quinone oxidoreductase (EC 1.6.5.5), at 1,050,940 to 1,051,869 _2751 Ac3H11_2752 - BarH, at 1,051,915 to 1,053,225 _2752 Position (kb) 1050 1051 1052Strain fitness (log2 ratio) -2 -1 0 1 2at 1050.004 kb on + strand, within Ac3H11_2750at 1050.004 kb on + strand, within Ac3H11_2750at 1050.005 kb on - strand, within Ac3H11_2750at 1050.005 kb on - strand, within Ac3H11_2750at 1050.005 kb on - strand, within Ac3H11_2750at 1050.058 kb on + strand, within Ac3H11_2750at 1050.059 kb on - strand, within Ac3H11_2750at 1050.217 kb on + strand, within Ac3H11_2750at 1050.217 kb on + strand, within Ac3H11_2750at 1050.217 kb on + strand, within Ac3H11_2750at 1050.217 kb on + strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.218 kb on - strand, within Ac3H11_2750at 1050.220 kb on + strand, within Ac3H11_2750at 1050.295 kb on + strand, within Ac3H11_2750at 1050.295 kb on + strand, within Ac3H11_2750at 1050.295 kb on + strand, within Ac3H11_2750at 1050.295 kb on + strand, within Ac3H11_2750at 1050.418 kb on + strand, within Ac3H11_2750at 1050.418 kb on + strand, within Ac3H11_2750at 1050.418 kb on + strand, within Ac3H11_2750at 1050.418 kb on + strand, within Ac3H11_2750at 1050.418 kb on + strand, within Ac3H11_2750at 1050.419 kb on - strand, within Ac3H11_2750at 1050.419 kb on - strand, within Ac3H11_2750at 1050.646 kb on + strandat 1050.646 kb on + strandat 1050.647 kb on - strandat 1050.647 kb on - strandat 1050.750 kb on + strandat 1050.750 kb on + strandat 1050.750 kb on + strandat 1050.750 kb on + strandat 1050.750 kb on + strandat 1050.750 kb on + strandat 1050.751 kb on - strandat 1050.751 kb on - strandat 1050.751 kb on - strandat 1050.824 kb on + strandat 1050.824 kb on + strandat 1050.824 kb on + strandat 1050.825 kb on - strandat 1050.869 kb on + strandat 1050.875 kb on + strandat 1050.875 kb on + strandat 1050.875 kb on + strandat 1050.875 kb on + strandat 1050.876 kb on - strandat 1050.888 kb on - strandat 1051.253 kb on - strand, within Ac3H11_2751at 1051.597 kb on - strand, within Ac3H11_2751at 1051.600 kb on + strand, within Ac3H11_2751at 1051.656 kb on - strand, within Ac3H11_2751at 1051.684 kb on + strand, within Ac3H11_2751at 1051.885 kb on + strandat 1051.885 kb on + strandat 1051.885 kb on + strandat 1051.886 kb on - strandat 1051.916 kb on + strandat 1051.917 kb on - strandat 1052.105 kb on + strandat 1052.105 kb on + strand, within Ac3H11_2752at 1052.106 kb on - strand, within Ac3H11_2752at 1052.381 kb on + strand, within Ac3H11_2752at 1052.408 kb on + strand, within Ac3H11_2752at 1052.409 kb on - strand, within Ac3H11_2752at 1052.459 kb on + strand, within Ac3H11_2752at 1052.483 kb on - strand, within Ac3H11_2752at 1052.831 kb on + strand, within Ac3H11_2752at 1052.831 kb on + strand, within Ac3H11_2752

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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1,050,004 + Ac3H11_2750 0.46 +0.8
1,050,004 + Ac3H11_2750 0.46 +1.9
1,050,005 - Ac3H11_2750 0.46 -1.3
1,050,005 - Ac3H11_2750 0.46 +0.4
1,050,005 - Ac3H11_2750 0.46 -1.9
1,050,058 + Ac3H11_2750 0.50 -0.1
1,050,059 - Ac3H11_2750 0.50 +0.3
1,050,217 + Ac3H11_2750 0.62 +1.4
1,050,217 + Ac3H11_2750 0.62 +1.6
1,050,217 + Ac3H11_2750 0.62 -0.4
1,050,217 + Ac3H11_2750 0.62 -0.3
1,050,218 - Ac3H11_2750 0.62 -0.2
1,050,218 - Ac3H11_2750 0.62 +0.1
1,050,218 - Ac3H11_2750 0.62 -0.3
1,050,218 - Ac3H11_2750 0.62 -0.3
1,050,218 - Ac3H11_2750 0.62 -0.3
1,050,218 - Ac3H11_2750 0.62 -0.7
1,050,220 + Ac3H11_2750 0.62 -2.0
1,050,295 + Ac3H11_2750 0.67 -0.1
1,050,295 + Ac3H11_2750 0.67 +0.3
1,050,295 + Ac3H11_2750 0.67 -0.1
1,050,295 + Ac3H11_2750 0.67 +1.2
1,050,418 + Ac3H11_2750 0.76 -2.6
1,050,418 + Ac3H11_2750 0.76 +0.4
1,050,418 + Ac3H11_2750 0.76 -1.5
1,050,418 + Ac3H11_2750 0.76 +0.1
1,050,418 + Ac3H11_2750 0.76 -1.1
1,050,419 - Ac3H11_2750 0.76 +2.0
1,050,419 - Ac3H11_2750 0.76 -0.6
1,050,646 + +0.5
1,050,646 + -0.7
1,050,647 - +0.9
1,050,647 - +0.2
1,050,750 + +0.0
1,050,750 + -1.1
1,050,750 + -0.2
1,050,750 + +0.7
1,050,750 + +0.4
1,050,750 + -2.6
1,050,751 - -0.6
1,050,751 - -0.3
1,050,751 - +0.7
1,050,824 + +1.0
1,050,824 + -0.2
1,050,824 + -0.8
1,050,825 - -0.7
1,050,869 + -2.2
1,050,875 + -2.2
1,050,875 + -0.2
1,050,875 + -0.6
1,050,875 + +2.3
1,050,876 - -1.5
1,050,888 - +0.4
1,051,253 - Ac3H11_2751 0.34 +0.3
1,051,597 - Ac3H11_2751 0.71 -0.4
1,051,600 + Ac3H11_2751 0.71 -0.4
1,051,656 - Ac3H11_2751 0.77 -1.9
1,051,684 + Ac3H11_2751 0.80 +0.4
1,051,885 + -0.5
1,051,885 + +1.6
1,051,885 + +1.2
1,051,886 - -0.5
1,051,916 + -0.1
1,051,917 - +0.2
1,052,105 + +0.3
1,052,105 + Ac3H11_2752 0.14 -0.3
1,052,106 - Ac3H11_2752 0.15 -0.2
1,052,381 + Ac3H11_2752 0.36 -0.4
1,052,408 + Ac3H11_2752 0.38 +1.0
1,052,409 - Ac3H11_2752 0.38 -1.0
1,052,459 + Ac3H11_2752 0.41 +0.2
1,052,483 - Ac3H11_2752 0.43 -1.1
1,052,831 + Ac3H11_2752 0.70 +1.4
1,052,831 + Ac3H11_2752 0.70 +0.4

Or see this region's nucleotide sequence