Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_180

Experiment: Zinc 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_179 and Ac3H11_180 are separated by 196 nucleotidesAc3H11_180 and Ac3H11_181 are separated by 138 nucleotides Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607 _179 Ac3H11_180 - Universal stress protein family, at 68,804 to 69,241 _180 Ac3H11_181 - FIG00538743: hypothetical protein, at 69,380 to 70,156 _181 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 67.945 kb on + strand, within Ac3H11_179at 67.945 kb on + strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.186 kb on - strand, within Ac3H11_179at 68.390 kb on - strand, within Ac3H11_179at 68.557 kb on + strandat 68.557 kb on + strandat 68.557 kb on + strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.558 kb on - strandat 68.733 kb on - strandat 68.733 kb on - strandat 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.069 kb on + strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.070 kb on - strand, within Ac3H11_180at 69.084 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.132 kb on + strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.133 kb on - strand, within Ac3H11_180at 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.247 kb on + strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.248 kb on - strandat 69.254 kb on + strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.255 kb on - strandat 69.277 kb on + strandat 69.277 kb on + strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.278 kb on - strandat 69.333 kb on - strandat 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 69.874 kb on - strand, within Ac3H11_181at 70.073 kb on + strand, within Ac3H11_181at 70.083 kb on + strandat 70.083 kb on + strandat 70.157 kb on - strandat 70.170 kb on + strandat 70.170 kb on + strandat 70.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1 mM
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67,945 + Ac3H11_179 0.33 +2.3
67,945 + Ac3H11_179 0.33 +0.6
67,946 - Ac3H11_179 0.33 -0.3
67,946 - Ac3H11_179 0.33 +1.6
67,946 - Ac3H11_179 0.33 -2.4
67,946 - Ac3H11_179 0.33 +0.3
68,041 + Ac3H11_179 0.42 +0.9
68,041 + Ac3H11_179 0.42 -0.2
68,041 + Ac3H11_179 0.42 +0.9
68,042 - Ac3H11_179 0.42 -0.6
68,042 - Ac3H11_179 0.42 -0.9
68,042 - Ac3H11_179 0.42 +0.2
68,042 - Ac3H11_179 0.42 -2.2
68,098 + Ac3H11_179 0.48 -0.2
68,098 + Ac3H11_179 0.48 +0.3
68,098 + Ac3H11_179 0.48 -0.2
68,098 + Ac3H11_179 0.48 -1.2
68,098 + Ac3H11_179 0.48 -1.2
68,098 + Ac3H11_179 0.48 -0.6
68,098 + Ac3H11_179 0.48 +0.8
68,099 - Ac3H11_179 0.48 -0.7
68,099 - Ac3H11_179 0.48 +1.8
68,099 - Ac3H11_179 0.48 +0.6
68,099 - Ac3H11_179 0.48 +0.1
68,099 - Ac3H11_179 0.48 -2.3
68,099 - Ac3H11_179 0.48 +0.9
68,099 - Ac3H11_179 0.48 -1.0
68,099 - Ac3H11_179 0.48 +0.1
68,099 - Ac3H11_179 0.48 +1.1
68,099 - Ac3H11_179 0.48 +1.8
68,185 + Ac3H11_179 0.57 +1.1
68,185 + Ac3H11_179 0.57 +0.1
68,186 - Ac3H11_179 0.57 -3.2
68,390 - Ac3H11_179 0.78 -0.6
68,557 + +0.4
68,557 + +0.6
68,557 + +0.9
68,558 - -1.0
68,558 - +0.6
68,558 - -0.8
68,558 - -0.3
68,733 - +0.7
68,733 - +0.1
69,069 + Ac3H11_180 0.61 +0.9
69,069 + Ac3H11_180 0.61 +0.3
69,069 + Ac3H11_180 0.61 -1.9
69,070 - Ac3H11_180 0.61 -2.3
69,070 - Ac3H11_180 0.61 +1.0
69,070 - Ac3H11_180 0.61 +0.8
69,070 - Ac3H11_180 0.61 -0.2
69,070 - Ac3H11_180 0.61 +0.3
69,070 - Ac3H11_180 0.61 -1.7
69,084 + Ac3H11_180 0.64 +0.7
69,132 + Ac3H11_180 0.75 +0.7
69,132 + Ac3H11_180 0.75 -1.2
69,132 + Ac3H11_180 0.75 +1.3
69,132 + Ac3H11_180 0.75 -1.3
69,132 + Ac3H11_180 0.75 +0.3
69,132 + Ac3H11_180 0.75 -0.3
69,133 - Ac3H11_180 0.75 -0.3
69,133 - Ac3H11_180 0.75 -1.9
69,133 - Ac3H11_180 0.75 -1.4
69,133 - Ac3H11_180 0.75 +1.1
69,133 - Ac3H11_180 0.75 +0.9
69,247 + -1.2
69,247 + -1.0
69,247 + +0.2
69,247 + +0.2
69,247 + +1.2
69,248 - +0.9
69,248 - +1.3
69,248 - -3.0
69,248 - +0.5
69,248 - +0.8
69,254 + -0.6
69,255 - -0.7
69,255 - +0.2
69,255 - -1.6
69,255 - +0.9
69,277 + -0.6
69,277 + -0.6
69,278 - +0.5
69,278 - +1.4
69,278 - -0.1
69,333 - -0.3
69,874 - Ac3H11_181 0.64 -0.9
69,874 - Ac3H11_181 0.64 -0.5
69,874 - Ac3H11_181 0.64 +0.1
69,874 - Ac3H11_181 0.64 +0.4
70,073 + Ac3H11_181 0.89 -0.0
70,083 + +0.1
70,083 + -0.1
70,157 - -0.3
70,170 + -0.1
70,170 + -0.6
70,170 + -1.1

Or see this region's nucleotide sequence