Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31460 and AZOBR_RS31465 are separated by 110 nucleotides AZOBR_RS31465 and AZOBR_RS31470 are separated by 13 nucleotides AZOBR_RS31470 and AZOBR_RS31475 are separated by 38 nucleotides AZOBR_RS31475 and AZOBR_RS31480 overlap by 14 nucleotides
AZOBR_RS31460: AZOBR_RS31460 - tripartite tricarboxylate transporter TctA, at 425,406 to 426,878
_RS31460
AZOBR_RS31465: AZOBR_RS31465 - membrane protein, at 426,989 to 427,657
_RS31465
AZOBR_RS31470: AZOBR_RS31470 - universal stress protein UspA, at 427,671 to 428,549
_RS31470
AZOBR_RS31475: AZOBR_RS31475 - chemotaxis protein CheY, at 428,588 to 429,262
_RS31475
AZOBR_RS31480: AZOBR_RS31480 - histidine kinase, at 429,249 to 431,771
_RS31480
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 426.948 kb on + strand at 426.948 kb on + strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 426.949 kb on - strand at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.589 kb on + strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 427.590 kb on - strand, within AZOBR_RS31465 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.331 kb on + strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.332 kb on - strand, within AZOBR_RS31470 at 428.455 kb on - strand, within AZOBR_RS31470 at 428.559 kb on + strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.595 kb on + strand at 428.720 kb on + strand, within AZOBR_RS31475 at 428.720 kb on + strand, within AZOBR_RS31475 at 428.721 kb on - strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.164 kb on + strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.165 kb on - strand, within AZOBR_RS31475 at 429.233 kb on + strand at 429.233 kb on + strand at 429.233 kb on + strand at 429.233 kb on + strand at 429.233 kb on + strand at 429.234 kb on - strand at 429.234 kb on - strand at 429.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 426,948 + +1.7 426,948 + +0.1 426,949 - +0.1 426,949 - +0.3 426,949 - -0.8 426,949 - +0.2 427,589 + AZOBR_RS31465 0.90 +0.3 427,589 + AZOBR_RS31465 0.90 +0.3 427,589 + AZOBR_RS31465 0.90 +1.1 427,589 + AZOBR_RS31465 0.90 +0.5 427,590 - AZOBR_RS31465 0.90 +0.1 427,590 - AZOBR_RS31465 0.90 +0.4 427,590 - AZOBR_RS31465 0.90 -0.3 427,590 - AZOBR_RS31465 0.90 -0.5 427,590 - AZOBR_RS31465 0.90 -0.2 428,331 + AZOBR_RS31470 0.75 +1.6 428,331 + AZOBR_RS31470 0.75 -0.2 428,332 - AZOBR_RS31470 0.75 +0.1 428,332 - AZOBR_RS31470 0.75 +0.7 428,332 - AZOBR_RS31470 0.75 +0.0 428,455 - AZOBR_RS31470 0.89 +1.0 428,559 + -3.0 428,560 - +1.7 428,560 - -1.4 428,560 - +1.1 428,560 - -0.5 428,595 + +0.0 428,720 + AZOBR_RS31475 0.20 +0.7 428,720 + AZOBR_RS31475 0.20 +0.5 428,721 - AZOBR_RS31475 0.20 +0.5 429,164 + AZOBR_RS31475 0.85 +0.2 429,164 + AZOBR_RS31475 0.85 +0.6 429,164 + AZOBR_RS31475 0.85 +0.7 429,164 + AZOBR_RS31475 0.85 +0.2 429,164 + AZOBR_RS31475 0.85 -0.3 429,164 + AZOBR_RS31475 0.85 +1.2 429,164 + AZOBR_RS31475 0.85 -1.8 429,164 + AZOBR_RS31475 0.85 +0.8 429,164 + AZOBR_RS31475 0.85 -0.5 429,165 - AZOBR_RS31475 0.85 +1.4 429,165 - AZOBR_RS31475 0.85 +0.9 429,165 - AZOBR_RS31475 0.85 -1.1 429,165 - AZOBR_RS31475 0.85 -0.5 429,165 - AZOBR_RS31475 0.85 +0.8 429,165 - AZOBR_RS31475 0.85 -0.1 429,165 - AZOBR_RS31475 0.85 -0.4 429,165 - AZOBR_RS31475 0.85 -0.2 429,165 - AZOBR_RS31475 0.85 +0.5 429,233 + -0.0 429,233 + +0.4 429,233 + +0.3 429,233 + -0.1 429,233 + +0.8 429,234 - -0.1 429,234 - +0.3 429,234 - -0.6
Or see this region's nucleotide sequence