Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31135

Experiment: Cytosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS31130 and AZOBR_RS31135 are separated by 279 nucleotidesAZOBR_RS31135 and AZOBR_RS31140 are separated by 63 nucleotides AZOBR_RS31130: AZOBR_RS31130 - membrane protein, at 348,197 to 348,904 _RS31130 AZOBR_RS31135: AZOBR_RS31135 - pyruvate phosphate dikinase, at 349,184 to 351,877 _RS31135 AZOBR_RS31140: AZOBR_RS31140 - beta-lactamase, at 351,941 to 353,023 _RS31140 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 348.233 kb on + strandat 348.233 kb on + strandat 348.234 kb on - strandat 348.234 kb on - strandat 348.234 kb on - strandat 348.269 kb on + strand, within AZOBR_RS31130at 348.270 kb on - strand, within AZOBR_RS31130at 348.270 kb on - strand, within AZOBR_RS31130at 348.434 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.575 kb on + strand, within AZOBR_RS31130at 348.602 kb on + strand, within AZOBR_RS31130at 348.603 kb on - strand, within AZOBR_RS31130at 348.603 kb on - strand, within AZOBR_RS31130at 348.638 kb on + strand, within AZOBR_RS31130at 348.639 kb on - strand, within AZOBR_RS31130at 348.639 kb on - strand, within AZOBR_RS31130at 348.671 kb on + strand, within AZOBR_RS31130at 348.671 kb on + strand, within AZOBR_RS31130at 348.672 kb on - strand, within AZOBR_RS31130at 348.672 kb on - strand, within AZOBR_RS31130at 348.987 kb on - strandat 348.987 kb on - strandat 348.987 kb on - strandat 349.017 kb on - strandat 349.161 kb on + strandat 349.161 kb on + strandat 349.214 kb on + strandat 349.355 kb on + strandat 349.355 kb on + strandat 349.356 kb on - strandat 349.362 kb on - strandat 349.379 kb on + strandat 349.757 kb on + strand, within AZOBR_RS31135at 349.874 kb on + strand, within AZOBR_RS31135at 349.875 kb on - strand, within AZOBR_RS31135at 350.670 kb on - strand, within AZOBR_RS31135at 351.266 kb on + strand, within AZOBR_RS31135at 351.450 kb on - strand, within AZOBR_RS31135at 351.530 kb on + strand, within AZOBR_RS31135at 351.789 kb on - strandat 352.320 kb on - strand, within AZOBR_RS31140at 352.425 kb on - strand, within AZOBR_RS31140at 352.425 kb on - strand, within AZOBR_RS31140at 352.425 kb on - strand, within AZOBR_RS31140at 352.439 kb on + strand, within AZOBR_RS31140at 352.637 kb on + strand, within AZOBR_RS31140at 352.637 kb on + strand, within AZOBR_RS31140at 352.637 kb on + strand, within AZOBR_RS31140at 352.638 kb on - strand, within AZOBR_RS31140at 352.856 kb on + strand, within AZOBR_RS31140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
remove
348,233 + -0.4
348,233 + +0.0
348,234 - +0.1
348,234 - -0.5
348,234 - +0.4
348,269 + AZOBR_RS31130 0.10 +0.5
348,270 - AZOBR_RS31130 0.10 +0.7
348,270 - AZOBR_RS31130 0.10 -1.1
348,434 + AZOBR_RS31130 0.33 -2.2
348,575 + AZOBR_RS31130 0.53 -0.1
348,575 + AZOBR_RS31130 0.53 -1.3
348,575 + AZOBR_RS31130 0.53 +0.3
348,602 + AZOBR_RS31130 0.57 +0.3
348,603 - AZOBR_RS31130 0.57 +0.6
348,603 - AZOBR_RS31130 0.57 -0.3
348,638 + AZOBR_RS31130 0.62 +1.1
348,639 - AZOBR_RS31130 0.62 -0.2
348,639 - AZOBR_RS31130 0.62 +0.2
348,671 + AZOBR_RS31130 0.67 -1.3
348,671 + AZOBR_RS31130 0.67 -0.6
348,672 - AZOBR_RS31130 0.67 -0.2
348,672 - AZOBR_RS31130 0.67 -0.5
348,987 - -2.3
348,987 - -2.2
348,987 - -1.8
349,017 - -0.1
349,161 + -0.5
349,161 + +0.2
349,214 + -5.2
349,355 + -2.3
349,355 + -4.2
349,356 - -1.7
349,362 - -0.1
349,379 + -3.2
349,757 + AZOBR_RS31135 0.21 -1.1
349,874 + AZOBR_RS31135 0.26 -2.2
349,875 - AZOBR_RS31135 0.26 -1.7
350,670 - AZOBR_RS31135 0.55 -3.8
351,266 + AZOBR_RS31135 0.77 -2.6
351,450 - AZOBR_RS31135 0.84 -3.7
351,530 + AZOBR_RS31135 0.87 -2.2
351,789 - -1.1
352,320 - AZOBR_RS31140 0.35 +1.1
352,425 - AZOBR_RS31140 0.45 +0.6
352,425 - AZOBR_RS31140 0.45 -0.4
352,425 - AZOBR_RS31140 0.45 -0.5
352,439 + AZOBR_RS31140 0.46 -0.4
352,637 + AZOBR_RS31140 0.64 -0.2
352,637 + AZOBR_RS31140 0.64 +0.2
352,637 + AZOBR_RS31140 0.64 -0.1
352,638 - AZOBR_RS31140 0.64 -0.2
352,856 + AZOBR_RS31140 0.84 -3.4

Or see this region's nucleotide sequence