Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18665 and AZOBR_RS18670 are separated by 134 nucleotides AZOBR_RS18670 and AZOBR_RS18675 are separated by 190 nucleotides
AZOBR_RS18665: AZOBR_RS18665 - peptidase M20, at 957,552 to 958,784
_RS18665
AZOBR_RS18670: AZOBR_RS18670 - guanosine 5'-monophosphate oxidoreductase, at 958,919 to 959,962
_RS18670
AZOBR_RS18675: AZOBR_RS18675 - UDP-galactopyranose mutase, at 960,153 to 961,271
_RS18675
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 957.951 kb on + strand, within AZOBR_RS18665 at 957.951 kb on + strand, within AZOBR_RS18665 at 957.952 kb on - strand, within AZOBR_RS18665 at 957.952 kb on - strand, within AZOBR_RS18665 at 957.952 kb on - strand, within AZOBR_RS18665 at 957.952 kb on - strand, within AZOBR_RS18665 at 957.957 kb on + strand, within AZOBR_RS18665 at 957.957 kb on + strand, within AZOBR_RS18665 at 957.957 kb on + strand, within AZOBR_RS18665 at 957.957 kb on + strand, within AZOBR_RS18665 at 957.958 kb on - strand, within AZOBR_RS18665 at 958.020 kb on + strand, within AZOBR_RS18665 at 958.021 kb on - strand, within AZOBR_RS18665 at 958.114 kb on - strand, within AZOBR_RS18665 at 958.114 kb on - strand, within AZOBR_RS18665 at 958.245 kb on + strand, within AZOBR_RS18665 at 958.624 kb on - strand, within AZOBR_RS18665 at 958.886 kb on + strand at 958.889 kb on - strand at 958.889 kb on - strand at 958.889 kb on - strand at 959.154 kb on - strand, within AZOBR_RS18670 at 959.211 kb on - strand, within AZOBR_RS18670 at 959.307 kb on - strand, within AZOBR_RS18670 at 959.720 kb on + strand, within AZOBR_RS18670 at 959.720 kb on + strand, within AZOBR_RS18670 at 959.720 kb on + strand, within AZOBR_RS18670 at 959.753 kb on + strand, within AZOBR_RS18670 at 959.753 kb on + strand, within AZOBR_RS18670 at 959.754 kb on - strand, within AZOBR_RS18670 at 959.754 kb on - strand, within AZOBR_RS18670 at 959.754 kb on - strand, within AZOBR_RS18670 at 959.873 kb on + strand at 959.873 kb on + strand at 959.873 kb on + strand at 959.873 kb on + strand at 959.874 kb on - strand at 959.874 kb on - strand at 959.874 kb on - strand at 959.976 kb on - strand at 959.976 kb on - strand at 959.988 kb on + strand at 960.119 kb on + strand at 960.119 kb on + strand at 960.150 kb on + strand at 960.151 kb on - strand at 960.151 kb on - strand at 960.151 kb on - strand at 960.151 kb on - strand at 960.187 kb on - strand at 960.187 kb on - strand at 960.187 kb on - strand at 960.301 kb on - strand, within AZOBR_RS18675 at 960.384 kb on + strand, within AZOBR_RS18675 at 960.385 kb on - strand, within AZOBR_RS18675 at 960.385 kb on - strand, within AZOBR_RS18675 at 960.385 kb on - strand, within AZOBR_RS18675 at 960.385 kb on - strand, within AZOBR_RS18675 at 960.493 kb on - strand, within AZOBR_RS18675 at 960.493 kb on - strand, within AZOBR_RS18675 at 960.609 kb on + strand, within AZOBR_RS18675 at 960.630 kb on + strand, within AZOBR_RS18675 at 960.631 kb on - strand, within AZOBR_RS18675 at 960.720 kb on + strand, within AZOBR_RS18675 at 960.721 kb on - strand, within AZOBR_RS18675 at 960.721 kb on - strand, within AZOBR_RS18675 at 960.721 kb on - strand, within AZOBR_RS18675 at 960.721 kb on - strand, within AZOBR_RS18675 at 960.885 kb on + strand, within AZOBR_RS18675
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 957,951 + AZOBR_RS18665 0.32 +0.9 957,951 + AZOBR_RS18665 0.32 -0.3 957,952 - AZOBR_RS18665 0.32 -0.3 957,952 - AZOBR_RS18665 0.32 -0.9 957,952 - AZOBR_RS18665 0.32 +0.1 957,952 - AZOBR_RS18665 0.32 -0.5 957,957 + AZOBR_RS18665 0.33 -0.4 957,957 + AZOBR_RS18665 0.33 +0.1 957,957 + AZOBR_RS18665 0.33 -0.5 957,957 + AZOBR_RS18665 0.33 +0.1 957,958 - AZOBR_RS18665 0.33 +0.5 958,020 + AZOBR_RS18665 0.38 +0.5 958,021 - AZOBR_RS18665 0.38 -0.0 958,114 - AZOBR_RS18665 0.46 -0.2 958,114 - AZOBR_RS18665 0.46 -2.0 958,245 + AZOBR_RS18665 0.56 -0.7 958,624 - AZOBR_RS18665 0.87 -0.3 958,886 + -0.9 958,889 - +0.6 958,889 - -1.1 958,889 - +1.1 959,154 - AZOBR_RS18670 0.23 +0.5 959,211 - AZOBR_RS18670 0.28 -0.0 959,307 - AZOBR_RS18670 0.37 +0.4 959,720 + AZOBR_RS18670 0.77 -0.1 959,720 + AZOBR_RS18670 0.77 -0.2 959,720 + AZOBR_RS18670 0.77 +0.3 959,753 + AZOBR_RS18670 0.80 +2.5 959,753 + AZOBR_RS18670 0.80 -0.1 959,754 - AZOBR_RS18670 0.80 +0.1 959,754 - AZOBR_RS18670 0.80 -0.1 959,754 - AZOBR_RS18670 0.80 -0.3 959,873 + -0.3 959,873 + -0.3 959,873 + -0.2 959,873 + -0.6 959,874 - +0.3 959,874 - +0.6 959,874 - +0.6 959,976 - +0.8 959,976 - -0.1 959,988 + -0.3 960,119 + +1.9 960,119 + -1.5 960,150 + -0.3 960,151 - -1.1 960,151 - -2.3 960,151 - +0.2 960,151 - -0.1 960,187 - -1.0 960,187 - -0.3 960,187 - -0.1 960,301 - AZOBR_RS18675 0.13 -0.4 960,384 + AZOBR_RS18675 0.21 -0.2 960,385 - AZOBR_RS18675 0.21 +0.5 960,385 - AZOBR_RS18675 0.21 -0.1 960,385 - AZOBR_RS18675 0.21 +1.0 960,385 - AZOBR_RS18675 0.21 +0.4 960,493 - AZOBR_RS18675 0.30 -0.3 960,493 - AZOBR_RS18675 0.30 +0.1 960,609 + AZOBR_RS18675 0.41 +0.4 960,630 + AZOBR_RS18675 0.43 +0.8 960,631 - AZOBR_RS18675 0.43 -1.2 960,720 + AZOBR_RS18675 0.51 -0.5 960,721 - AZOBR_RS18675 0.51 -0.0 960,721 - AZOBR_RS18675 0.51 +0.1 960,721 - AZOBR_RS18675 0.51 +0.2 960,721 - AZOBR_RS18675 0.51 +0.7 960,885 + AZOBR_RS18675 0.65 +0.2
Or see this region's nucleotide sequence