Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05160 and AZOBR_RS05165 are separated by 108 nucleotides AZOBR_RS05165 and AZOBR_RS05170 are separated by 153 nucleotides AZOBR_RS05170 and AZOBR_RS05175 are separated by 79 nucleotides
AZOBR_RS05160: AZOBR_RS05160 - hypothetical protein, at 1,098,098 to 1,099,303
_RS05160
AZOBR_RS05165: AZOBR_RS05165 - carnitine dehydratase, at 1,099,412 to 1,100,524
_RS05165
AZOBR_RS05170: AZOBR_RS05170 - hypothetical protein, at 1,100,678 to 1,100,869
_RS05170
AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264
_RS05175
Position (kb) 1099
1100
1101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1098.794 kb on + strand, within AZOBR_RS05160 at 1098.795 kb on - strand, within AZOBR_RS05160 at 1098.795 kb on - strand, within AZOBR_RS05160 at 1098.795 kb on - strand, within AZOBR_RS05160 at 1098.795 kb on - strand, within AZOBR_RS05160 at 1099.406 kb on + strand at 1099.406 kb on + strand at 1099.406 kb on + strand at 1099.815 kb on + strand, within AZOBR_RS05165 at 1099.815 kb on + strand, within AZOBR_RS05165 at 1099.815 kb on + strand, within AZOBR_RS05165 at 1100.095 kb on + strand, within AZOBR_RS05165 at 1100.095 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.097 kb on + strand, within AZOBR_RS05165 at 1100.098 kb on - strand, within AZOBR_RS05165 at 1100.098 kb on - strand, within AZOBR_RS05165 at 1100.098 kb on - strand, within AZOBR_RS05165 at 1100.098 kb on - strand, within AZOBR_RS05165 at 1100.098 kb on - strand, within AZOBR_RS05165 at 1100.235 kb on + strand, within AZOBR_RS05165 at 1100.347 kb on - strand, within AZOBR_RS05165 at 1100.461 kb on - strand at 1100.476 kb on - strand at 1100.703 kb on - strand, within AZOBR_RS05170 at 1100.703 kb on - strand, within AZOBR_RS05170 at 1100.789 kb on + strand, within AZOBR_RS05170
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 1,098,794 + AZOBR_RS05160 0.58 +2.0 1,098,795 - AZOBR_RS05160 0.58 +0.1 1,098,795 - AZOBR_RS05160 0.58 -0.1 1,098,795 - AZOBR_RS05160 0.58 -0.5 1,098,795 - AZOBR_RS05160 0.58 -2.1 1,099,406 + -1.1 1,099,406 + -0.6 1,099,406 + -0.1 1,099,815 + AZOBR_RS05165 0.36 +0.4 1,099,815 + AZOBR_RS05165 0.36 +0.0 1,099,815 + AZOBR_RS05165 0.36 +0.8 1,100,095 + AZOBR_RS05165 0.61 +0.1 1,100,095 + AZOBR_RS05165 0.61 -0.1 1,100,097 + AZOBR_RS05165 0.62 -1.1 1,100,097 + AZOBR_RS05165 0.62 -0.6 1,100,097 + AZOBR_RS05165 0.62 +0.2 1,100,097 + AZOBR_RS05165 0.62 -1.1 1,100,097 + AZOBR_RS05165 0.62 -0.2 1,100,097 + AZOBR_RS05165 0.62 +0.0 1,100,097 + AZOBR_RS05165 0.62 +0.4 1,100,098 - AZOBR_RS05165 0.62 +0.7 1,100,098 - AZOBR_RS05165 0.62 -0.8 1,100,098 - AZOBR_RS05165 0.62 +0.0 1,100,098 - AZOBR_RS05165 0.62 +0.3 1,100,098 - AZOBR_RS05165 0.62 -0.6 1,100,235 + AZOBR_RS05165 0.74 -0.6 1,100,347 - AZOBR_RS05165 0.84 -1.9 1,100,461 - +0.8 1,100,476 - +0.3 1,100,703 - AZOBR_RS05170 0.13 -0.2 1,100,703 - AZOBR_RS05170 0.13 +0.9 1,100,789 + AZOBR_RS05170 0.58 +0.4
Or see this region's nucleotide sequence